Strain Fitness in Xanthobacter sp. DMC5 around GFF3709

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3708 and GFF3709 overlap by 4 nucleotidesGFF3709 and GFF3710 are separated by 1 nucleotidesGFF3710 and GFF3711 overlap by 4 nucleotides GFF3708 - PqqA peptide cyclase, at 50,746 to 51,927 GFF3708 GFF3709 - Bifunctional coenzyme PQQ synthesis protein C/D, at 51,924 to 52,199 GFF3709 GFF3710 - Bifunctional coenzyme PQQ synthesis protein C/D, at 52,201 to 53,022 GFF3710 GFF3711 - Coenzyme PQQ synthesis protein B, at 53,019 to 53,918 GFF3711 Position (kb) 51 52 53Strain fitness (log2 ratio) -2 -1 0 1at 51.176 kb on + strand, within GFF3708at 51.177 kb on - strand, within GFF3708at 51.180 kb on - strand, within GFF3708at 51.299 kb on + strand, within GFF3708at 51.311 kb on + strand, within GFF3708at 51.311 kb on + strand, within GFF3708at 51.311 kb on + strand, within GFF3708at 51.312 kb on - strand, within GFF3708at 51.485 kb on + strand, within GFF3708at 51.617 kb on + strand, within GFF3708at 51.618 kb on - strand, within GFF3708at 51.618 kb on - strand, within GFF3708at 51.798 kb on - strand, within GFF3708at 52.006 kb on + strand, within GFF3709at 52.007 kb on - strand, within GFF3709at 52.265 kb on + strandat 52.266 kb on - strandat 52.274 kb on + strandat 52.275 kb on - strandat 52.313 kb on + strand, within GFF3710at 52.373 kb on + strand, within GFF3710at 52.373 kb on + strand, within GFF3710at 52.427 kb on + strand, within GFF3710at 52.428 kb on - strand, within GFF3710at 52.440 kb on - strand, within GFF3710at 52.457 kb on + strand, within GFF3710at 52.457 kb on + strand, within GFF3710at 52.458 kb on - strand, within GFF3710at 52.479 kb on + strand, within GFF3710at 52.479 kb on + strand, within GFF3710at 52.568 kb on + strand, within GFF3710at 52.568 kb on + strand, within GFF3710at 52.568 kb on + strand, within GFF3710at 52.568 kb on + strand, within GFF3710at 52.622 kb on + strand, within GFF3710at 52.622 kb on + strand, within GFF3710at 52.623 kb on - strand, within GFF3710at 52.794 kb on - strand, within GFF3710at 52.860 kb on + strand, within GFF3710at 52.861 kb on - strand, within GFF3710at 52.861 kb on - strand, within GFF3710at 53.022 kb on + strandat 53.023 kb on - strandat 53.023 kb on - strandat 53.123 kb on + strand, within GFF3711

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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51,176 + GFF3708 0.36 -1.7
51,177 - GFF3708 0.36 -0.3
51,180 - GFF3708 0.37 +0.4
51,299 + GFF3708 0.47 -0.1
51,311 + GFF3708 0.48 +1.7
51,311 + GFF3708 0.48 +1.3
51,311 + GFF3708 0.48 +0.5
51,312 - GFF3708 0.48 -2.0
51,485 + GFF3708 0.63 -0.3
51,617 + GFF3708 0.74 -0.1
51,618 - GFF3708 0.74 -0.6
51,618 - GFF3708 0.74 -0.3
51,798 - GFF3708 0.89 +0.4
52,006 + GFF3709 0.30 -1.5
52,007 - GFF3709 0.30 -1.0
52,265 + -1.5
52,266 - -0.3
52,274 + +0.2
52,275 - -0.1
52,313 + GFF3710 0.14 +1.0
52,373 + GFF3710 0.21 -0.3
52,373 + GFF3710 0.21 +0.3
52,427 + GFF3710 0.27 +0.6
52,428 - GFF3710 0.28 -0.6
52,440 - GFF3710 0.29 +1.4
52,457 + GFF3710 0.31 -0.4
52,457 + GFF3710 0.31 +0.3
52,458 - GFF3710 0.31 +1.1
52,479 + GFF3710 0.34 +0.6
52,479 + GFF3710 0.34 +0.0
52,568 + GFF3710 0.45 -0.0
52,568 + GFF3710 0.45 -1.7
52,568 + GFF3710 0.45 -0.4
52,568 + GFF3710 0.45 -2.0
52,622 + GFF3710 0.51 +0.1
52,622 + GFF3710 0.51 +0.4
52,623 - GFF3710 0.51 -0.4
52,794 - GFF3710 0.72 -0.4
52,860 + GFF3710 0.80 +0.5
52,861 - GFF3710 0.80 -1.8
52,861 - GFF3710 0.80 +1.3
53,022 + +0.5
53,023 - +1.7
53,023 - +0.5
53,123 + GFF3711 0.12 +0.2

Or see this region's nucleotide sequence