Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3701 and GFF3702 are separated by 44 nucleotides GFF3702 and GFF3703 overlap by 4 nucleotides GFF3703 and GFF3704 overlap by 4 nucleotides
GFF3701 - Cytochrome c2, at 44,243 to 44,635
GFF3701
GFF3702 - Formyltransferase/hydrolase complex Fhc subunit C, at 44,680 to 45,486
GFF3702
GFF3703 - Formyltransferase/hydrolase complex subunit D, at 45,483 to 46,415
GFF3703
GFF3704 - Formyltransferase/hydrolase complex Fhc subunit A, at 46,412 to 48,061
GFF3704
Position (kb) 45
46
47 Strain fitness (log2 ratio) -2
-1
0
1
2 at 44.498 kb on + strand, within GFF3701 at 44.498 kb on + strand, within GFF3701 at 44.499 kb on - strand, within GFF3701 at 44.499 kb on - strand, within GFF3701 at 44.877 kb on - strand, within GFF3702 at 45.551 kb on - strand at 45.763 kb on + strand, within GFF3703 at 45.764 kb on - strand, within GFF3703 at 45.828 kb on + strand, within GFF3703 at 45.829 kb on - strand, within GFF3703 at 46.563 kb on + strand at 46.563 kb on + strand at 46.678 kb on - strand, within GFF3704 at 46.683 kb on - strand, within GFF3704 at 46.897 kb on - strand, within GFF3704 at 46.897 kb on - strand, within GFF3704 at 46.938 kb on + strand, within GFF3704 at 46.938 kb on + strand, within GFF3704 at 46.939 kb on - strand, within GFF3704 at 46.939 kb on - strand, within GFF3704 at 46.939 kb on - strand, within GFF3704 at 46.939 kb on - strand, within GFF3704 at 46.939 kb on - strand, within GFF3704 at 47.095 kb on + strand, within GFF3704
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 44,498 + GFF3701 0.65 -0.5 44,498 + GFF3701 0.65 +0.1 44,499 - GFF3701 0.65 -0.0 44,499 - GFF3701 0.65 -1.4 44,877 - GFF3702 0.24 +0.1 45,551 - +0.1 45,763 + GFF3703 0.30 -0.7 45,764 - GFF3703 0.30 +1.0 45,828 + GFF3703 0.37 +0.1 45,829 - GFF3703 0.37 +1.1 46,563 + +0.5 46,563 + -0.1 46,678 - GFF3704 0.16 -1.3 46,683 - GFF3704 0.16 -2.5 46,897 - GFF3704 0.29 +1.4 46,897 - GFF3704 0.29 +2.0 46,938 + GFF3704 0.32 +0.6 46,938 + GFF3704 0.32 -0.1 46,939 - GFF3704 0.32 -0.1 46,939 - GFF3704 0.32 -1.9 46,939 - GFF3704 0.32 +0.6 46,939 - GFF3704 0.32 +0.1 46,939 - GFF3704 0.32 +0.8 47,095 + GFF3704 0.41 +1.4
Or see this region's nucleotide sequence