Strain Fitness in Xanthobacter sp. DMC5 around GFF3643

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3642 and GFF3643 overlap by 1 nucleotidesGFF3643 and GFF3644 are separated by 685 nucleotides GFF3642 - hypothetical protein, at 507,679 to 510,192 GFF3642 GFF3643 - hypothetical protein, at 510,192 to 511,067 GFF3643 GFF3644 - hypothetical protein, at 511,753 to 512,181 GFF3644 Position (kb) 510 511 512Strain fitness (log2 ratio) -2 -1 0 1 2at 509.268 kb on + strand, within GFF3642at 509.284 kb on - strand, within GFF3642at 509.329 kb on + strand, within GFF3642at 509.330 kb on - strand, within GFF3642at 509.330 kb on - strand, within GFF3642at 509.330 kb on - strand, within GFF3642at 509.330 kb on - strand, within GFF3642at 509.330 kb on - strand, within GFF3642at 509.431 kb on + strand, within GFF3642at 509.431 kb on + strand, within GFF3642at 509.431 kb on + strand, within GFF3642at 509.575 kb on + strand, within GFF3642at 509.575 kb on + strand, within GFF3642at 509.576 kb on - strand, within GFF3642at 509.576 kb on - strand, within GFF3642at 509.579 kb on + strand, within GFF3642at 509.580 kb on - strand, within GFF3642at 509.580 kb on - strand, within GFF3642at 509.580 kb on - strand, within GFF3642at 509.580 kb on - strand, within GFF3642at 509.580 kb on - strand, within GFF3642at 509.580 kb on - strand, within GFF3642at 509.630 kb on + strand, within GFF3642at 509.631 kb on - strand, within GFF3642at 509.631 kb on - strand, within GFF3642at 509.755 kb on + strand, within GFF3642at 509.755 kb on + strand, within GFF3642at 509.756 kb on - strand, within GFF3642at 509.756 kb on - strand, within GFF3642at 509.756 kb on - strand, within GFF3642at 509.756 kb on - strand, within GFF3642at 509.803 kb on + strand, within GFF3642at 509.804 kb on - strand, within GFF3642at 509.804 kb on - strand, within GFF3642at 509.804 kb on - strand, within GFF3642at 509.804 kb on - strand, within GFF3642at 509.804 kb on - strand, within GFF3642at 509.874 kb on - strand, within GFF3642at 509.874 kb on - strand, within GFF3642at 509.975 kb on + strandat 509.976 kb on - strandat 509.976 kb on - strandat 509.976 kb on - strandat 509.979 kb on + strandat 509.980 kb on - strandat 509.980 kb on - strandat 509.980 kb on - strandat 510.085 kb on + strandat 510.198 kb on + strandat 510.198 kb on + strandat 510.198 kb on + strandat 510.198 kb on + strandat 510.198 kb on + strandat 510.199 kb on - strandat 510.199 kb on - strandat 510.199 kb on - strandat 510.362 kb on + strand, within GFF3643at 510.362 kb on + strand, within GFF3643at 510.363 kb on - strand, within GFF3643at 510.363 kb on - strand, within GFF3643at 510.363 kb on - strand, within GFF3643at 510.466 kb on + strand, within GFF3643at 510.467 kb on - strand, within GFF3643at 510.543 kb on + strand, within GFF3643at 510.543 kb on + strand, within GFF3643at 510.544 kb on - strand, within GFF3643at 510.544 kb on - strand, within GFF3643at 510.596 kb on - strand, within GFF3643at 510.694 kb on + strand, within GFF3643at 510.694 kb on + strand, within GFF3643at 510.695 kb on - strand, within GFF3643at 510.695 kb on - strand, within GFF3643at 510.715 kb on + strand, within GFF3643at 510.791 kb on + strand, within GFF3643at 510.791 kb on + strand, within GFF3643at 510.791 kb on + strand, within GFF3643at 510.791 kb on + strand, within GFF3643at 510.792 kb on - strand, within GFF3643at 510.853 kb on + strand, within GFF3643at 510.853 kb on + strand, within GFF3643at 510.853 kb on + strand, within GFF3643at 510.854 kb on - strand, within GFF3643at 510.854 kb on - strand, within GFF3643at 510.854 kb on - strand, within GFF3643at 510.854 kb on - strand, within GFF3643at 510.854 kb on - strand, within GFF3643at 510.854 kb on - strand, within GFF3643at 510.854 kb on - strand, within GFF3643at 510.912 kb on + strand, within GFF3643at 510.912 kb on + strand, within GFF3643at 510.913 kb on - strand, within GFF3643at 510.913 kb on - strand, within GFF3643at 510.913 kb on - strand, within GFF3643at 510.919 kb on + strand, within GFF3643at 510.919 kb on + strand, within GFF3643at 510.919 kb on + strand, within GFF3643at 510.919 kb on + strand, within GFF3643at 510.919 kb on + strand, within GFF3643at 510.920 kb on - strand, within GFF3643at 510.920 kb on - strand, within GFF3643at 510.920 kb on - strand, within GFF3643at 510.920 kb on - strand, within GFF3643at 510.979 kb on + strand, within GFF3643at 510.980 kb on - strandat 510.980 kb on - strandat 510.990 kb on + strandat 510.991 kb on - strandat 510.991 kb on - strandat 511.093 kb on + strandat 511.109 kb on + strandat 511.110 kb on - strandat 511.136 kb on + strandat 511.136 kb on + strandat 511.136 kb on + strandat 511.136 kb on + strandat 511.137 kb on - strandat 511.137 kb on - strandat 511.185 kb on + strandat 511.186 kb on - strandat 511.186 kb on - strandat 511.265 kb on + strandat 511.326 kb on + strandat 511.327 kb on - strandat 511.338 kb on + strandat 511.341 kb on + strandat 511.341 kb on + strandat 511.341 kb on + strandat 511.370 kb on + strandat 511.370 kb on + strandat 511.431 kb on + strandat 511.431 kb on + strandat 511.432 kb on - strandat 511.496 kb on + strandat 511.496 kb on + strandat 511.496 kb on + strandat 511.496 kb on + strandat 511.560 kb on + strandat 511.560 kb on + strandat 511.561 kb on - strandat 511.561 kb on - strandat 511.561 kb on - strandat 511.561 kb on - strandat 511.561 kb on - strandat 511.605 kb on + strandat 511.612 kb on + strandat 511.625 kb on - strandat 511.625 kb on - strandat 511.641 kb on + strandat 511.641 kb on + strandat 511.642 kb on - strandat 511.642 kb on - strandat 511.642 kb on - strandat 511.642 kb on - strandat 511.642 kb on - strandat 511.642 kb on - strandat 511.657 kb on - strandat 511.696 kb on + strandat 511.742 kb on + strandat 511.800 kb on + strand, within GFF3644at 511.801 kb on - strand, within GFF3644at 511.801 kb on - strand, within GFF3644at 511.848 kb on - strand, within GFF3644at 511.947 kb on + strand, within GFF3644

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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509,268 + GFF3642 0.63 -0.8
509,284 - GFF3642 0.64 +0.5
509,329 + GFF3642 0.66 -1.1
509,330 - GFF3642 0.66 -0.1
509,330 - GFF3642 0.66 -0.6
509,330 - GFF3642 0.66 -0.7
509,330 - GFF3642 0.66 +0.4
509,330 - GFF3642 0.66 +0.2
509,431 + GFF3642 0.70 +0.2
509,431 + GFF3642 0.70 -0.2
509,431 + GFF3642 0.70 +0.6
509,575 + GFF3642 0.75 -0.5
509,575 + GFF3642 0.75 -0.1
509,576 - GFF3642 0.75 +0.3
509,576 - GFF3642 0.75 +0.1
509,579 + GFF3642 0.76 +0.5
509,580 - GFF3642 0.76 -0.9
509,580 - GFF3642 0.76 -0.5
509,580 - GFF3642 0.76 -0.5
509,580 - GFF3642 0.76 -0.9
509,580 - GFF3642 0.76 -1.0
509,580 - GFF3642 0.76 +0.1
509,630 + GFF3642 0.78 -0.5
509,631 - GFF3642 0.78 -0.3
509,631 - GFF3642 0.78 +0.1
509,755 + GFF3642 0.83 +0.8
509,755 + GFF3642 0.83 +0.7
509,756 - GFF3642 0.83 -0.6
509,756 - GFF3642 0.83 -0.9
509,756 - GFF3642 0.83 -0.8
509,756 - GFF3642 0.83 +2.7
509,803 + GFF3642 0.84 +0.4
509,804 - GFF3642 0.85 -1.1
509,804 - GFF3642 0.85 -0.4
509,804 - GFF3642 0.85 +0.2
509,804 - GFF3642 0.85 +0.1
509,804 - GFF3642 0.85 -0.7
509,874 - GFF3642 0.87 +0.0
509,874 - GFF3642 0.87 +0.2
509,975 + +0.6
509,976 - -1.9
509,976 - -1.1
509,976 - -1.6
509,979 + +0.6
509,980 - -0.8
509,980 - +0.5
509,980 - +0.6
510,085 + -1.4
510,198 + +1.4
510,198 + +0.4
510,198 + +1.2
510,198 + +0.4
510,198 + -0.7
510,199 - -0.8
510,199 - -0.4
510,199 - +1.1
510,362 + GFF3643 0.19 -0.6
510,362 + GFF3643 0.19 -1.4
510,363 - GFF3643 0.20 -0.9
510,363 - GFF3643 0.20 +0.6
510,363 - GFF3643 0.20 +0.2
510,466 + GFF3643 0.31 -0.2
510,467 - GFF3643 0.31 +0.7
510,543 + GFF3643 0.40 +0.1
510,543 + GFF3643 0.40 +0.3
510,544 - GFF3643 0.40 +1.1
510,544 - GFF3643 0.40 -0.6
510,596 - GFF3643 0.46 -0.7
510,694 + GFF3643 0.57 -0.8
510,694 + GFF3643 0.57 -0.5
510,695 - GFF3643 0.57 -1.6
510,695 - GFF3643 0.57 -0.3
510,715 + GFF3643 0.60 -1.2
510,791 + GFF3643 0.68 -0.5
510,791 + GFF3643 0.68 -0.5
510,791 + GFF3643 0.68 +1.1
510,791 + GFF3643 0.68 -1.0
510,792 - GFF3643 0.68 -0.7
510,853 + GFF3643 0.75 +0.1
510,853 + GFF3643 0.75 -0.5
510,853 + GFF3643 0.75 -0.1
510,854 - GFF3643 0.76 +0.5
510,854 - GFF3643 0.76 -0.4
510,854 - GFF3643 0.76 +0.6
510,854 - GFF3643 0.76 -0.5
510,854 - GFF3643 0.76 +0.1
510,854 - GFF3643 0.76 -1.5
510,854 - GFF3643 0.76 -1.6
510,912 + GFF3643 0.82 -0.1
510,912 + GFF3643 0.82 -0.7
510,913 - GFF3643 0.82 -0.2
510,913 - GFF3643 0.82 +0.4
510,913 - GFF3643 0.82 +0.1
510,919 + GFF3643 0.83 -0.7
510,919 + GFF3643 0.83 -0.4
510,919 + GFF3643 0.83 -0.1
510,919 + GFF3643 0.83 +1.5
510,919 + GFF3643 0.83 -0.4
510,920 - GFF3643 0.83 +0.3
510,920 - GFF3643 0.83 +0.8
510,920 - GFF3643 0.83 -0.2
510,920 - GFF3643 0.83 +0.0
510,979 + GFF3643 0.90 +0.1
510,980 - +0.8
510,980 - +0.4
510,990 + +0.1
510,991 - +1.8
510,991 - -0.5
511,093 + -1.3
511,109 + +0.1
511,110 - -1.4
511,136 + -0.8
511,136 + +0.1
511,136 + +0.4
511,136 + -0.3
511,137 - +0.5
511,137 - -0.8
511,185 + -1.7
511,186 - -0.3
511,186 - -1.0
511,265 + +0.4
511,326 + +0.6
511,327 - +1.4
511,338 + +0.2
511,341 + +1.0
511,341 + -0.2
511,341 + -0.7
511,370 + +0.8
511,370 + -0.1
511,431 + -0.3
511,431 + +1.1
511,432 - +1.6
511,496 + +1.4
511,496 + -1.0
511,496 + -0.1
511,496 + +0.1
511,560 + +0.8
511,560 + -1.2
511,561 - +2.2
511,561 - -0.1
511,561 - +0.5
511,561 - +1.0
511,561 - +0.1
511,605 + +0.5
511,612 + +0.1
511,625 - +0.4
511,625 - +0.9
511,641 + -0.5
511,641 + +0.2
511,642 - -1.4
511,642 - -0.0
511,642 - +0.9
511,642 - +1.4
511,642 - +1.4
511,642 - +1.0
511,657 - +0.8
511,696 + +0.6
511,742 + +0.5
511,800 + GFF3644 0.11 -0.0
511,801 - GFF3644 0.11 -0.1
511,801 - GFF3644 0.11 +0.4
511,848 - GFF3644 0.22 +1.3
511,947 + GFF3644 0.45 +1.2

Or see this region's nucleotide sequence