Strain Fitness in Xanthobacter sp. DMC5 around GFF3629

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3627 and GFF3628 are separated by 7 nucleotidesGFF3628 and GFF3629 are separated by 1 nucleotidesGFF3629 and GFF3630 overlap by 4 nucleotides GFF3627 - HTH-type transcriptional regulator GltC, at 492,007 to 492,921 GFF3627 GFF3628 - hypothetical protein, at 492,929 to 493,156 GFF3628 GFF3629 - hypothetical protein, at 493,158 to 494,405 GFF3629 GFF3630 - hypothetical protein, at 494,402 to 495,454 GFF3630 Position (kb) 493 494 495Strain fitness (log2 ratio) -2 -1 0 1 2at 492.167 kb on + strand, within GFF3627at 492.172 kb on - strand, within GFF3627at 492.173 kb on + strand, within GFF3627at 492.201 kb on + strand, within GFF3627at 492.250 kb on - strand, within GFF3627at 492.302 kb on - strand, within GFF3627at 492.302 kb on - strand, within GFF3627at 492.302 kb on - strand, within GFF3627at 492.302 kb on - strand, within GFF3627at 492.302 kb on - strand, within GFF3627at 492.302 kb on - strand, within GFF3627at 492.303 kb on + strand, within GFF3627at 492.304 kb on - strand, within GFF3627at 492.305 kb on + strand, within GFF3627at 492.306 kb on - strand, within GFF3627at 492.344 kb on + strand, within GFF3627at 492.365 kb on - strand, within GFF3627at 492.365 kb on - strand, within GFF3627at 492.423 kb on + strand, within GFF3627at 492.423 kb on + strand, within GFF3627at 492.424 kb on - strand, within GFF3627at 492.424 kb on - strand, within GFF3627at 492.424 kb on - strand, within GFF3627at 492.427 kb on - strand, within GFF3627at 492.427 kb on - strand, within GFF3627at 492.433 kb on - strand, within GFF3627at 492.465 kb on - strand, within GFF3627at 492.606 kb on + strand, within GFF3627at 492.606 kb on + strand, within GFF3627at 492.606 kb on + strand, within GFF3627at 492.606 kb on + strand, within GFF3627at 492.606 kb on + strand, within GFF3627at 492.607 kb on - strand, within GFF3627at 492.607 kb on - strand, within GFF3627at 492.607 kb on - strand, within GFF3627at 492.612 kb on + strand, within GFF3627at 492.612 kb on + strand, within GFF3627at 492.613 kb on - strand, within GFF3627at 492.613 kb on - strand, within GFF3627at 492.613 kb on - strand, within GFF3627at 492.640 kb on + strand, within GFF3627at 492.641 kb on - strand, within GFF3627at 492.641 kb on - strand, within GFF3627at 492.641 kb on - strand, within GFF3627at 492.706 kb on + strand, within GFF3627at 492.707 kb on - strand, within GFF3627at 492.707 kb on - strand, within GFF3627at 492.707 kb on - strand, within GFF3627at 492.707 kb on - strand, within GFF3627at 492.707 kb on - strand, within GFF3627at 492.707 kb on - strand, within GFF3627at 492.717 kb on + strand, within GFF3627at 492.717 kb on + strand, within GFF3627at 492.718 kb on - strand, within GFF3627at 492.718 kb on - strand, within GFF3627at 492.754 kb on - strand, within GFF3627at 492.793 kb on + strand, within GFF3627at 492.793 kb on + strand, within GFF3627at 492.794 kb on - strand, within GFF3627at 492.794 kb on - strand, within GFF3627at 492.803 kb on + strand, within GFF3627at 492.803 kb on + strand, within GFF3627at 492.804 kb on - strand, within GFF3627at 492.891 kb on + strandat 492.891 kb on + strandat 492.892 kb on - strandat 492.919 kb on + strandat 492.920 kb on - strandat 492.937 kb on + strandat 492.937 kb on + strandat 492.938 kb on - strandat 493.062 kb on + strand, within GFF3628at 493.062 kb on + strand, within GFF3628at 493.062 kb on + strand, within GFF3628at 493.063 kb on - strand, within GFF3628at 493.063 kb on - strand, within GFF3628at 493.169 kb on - strandat 493.169 kb on - strandat 493.169 kb on - strandat 493.245 kb on - strandat 493.411 kb on + strand, within GFF3629at 493.412 kb on - strand, within GFF3629at 493.438 kb on + strand, within GFF3629at 493.438 kb on + strand, within GFF3629at 493.438 kb on + strand, within GFF3629at 493.438 kb on + strand, within GFF3629at 493.438 kb on + strand, within GFF3629at 493.438 kb on + strand, within GFF3629at 493.438 kb on + strand, within GFF3629at 493.438 kb on + strand, within GFF3629at 493.439 kb on - strand, within GFF3629at 493.439 kb on - strand, within GFF3629at 493.439 kb on - strand, within GFF3629at 493.500 kb on - strand, within GFF3629at 493.555 kb on + strand, within GFF3629at 493.555 kb on + strand, within GFF3629at 493.555 kb on + strand, within GFF3629at 493.555 kb on + strand, within GFF3629at 493.556 kb on - strand, within GFF3629at 493.556 kb on - strand, within GFF3629at 493.619 kb on + strand, within GFF3629at 493.619 kb on + strand, within GFF3629at 493.620 kb on - strand, within GFF3629at 493.620 kb on - strand, within GFF3629at 493.667 kb on + strand, within GFF3629at 493.707 kb on + strand, within GFF3629at 493.707 kb on + strand, within GFF3629at 493.707 kb on + strand, within GFF3629at 493.707 kb on + strand, within GFF3629at 493.707 kb on + strand, within GFF3629at 493.707 kb on + strand, within GFF3629at 493.707 kb on + strand, within GFF3629at 493.708 kb on - strand, within GFF3629at 493.751 kb on + strand, within GFF3629at 493.751 kb on + strand, within GFF3629at 493.751 kb on + strand, within GFF3629at 493.751 kb on + strand, within GFF3629at 493.751 kb on + strand, within GFF3629at 493.751 kb on + strand, within GFF3629at 493.751 kb on + strand, within GFF3629at 493.752 kb on - strand, within GFF3629at 493.752 kb on - strand, within GFF3629at 493.752 kb on - strand, within GFF3629at 493.752 kb on - strand, within GFF3629at 493.884 kb on + strand, within GFF3629at 493.884 kb on + strand, within GFF3629at 493.885 kb on - strand, within GFF3629at 493.885 kb on - strand, within GFF3629at 494.113 kb on + strand, within GFF3629at 494.113 kb on + strand, within GFF3629at 494.168 kb on - strand, within GFF3629at 494.168 kb on - strand, within GFF3629at 494.168 kb on - strand, within GFF3629at 494.168 kb on - strand, within GFF3629at 494.212 kb on + strand, within GFF3629at 494.212 kb on + strand, within GFF3629at 494.212 kb on + strand, within GFF3629at 494.213 kb on - strand, within GFF3629at 494.213 kb on - strand, within GFF3629at 494.405 kb on + strandat 494.405 kb on + strandat 494.405 kb on + strandat 494.406 kb on - strandat 494.406 kb on - strandat 494.406 kb on - strandat 494.406 kb on - strandat 494.508 kb on + strand, within GFF3630at 494.508 kb on + strand, within GFF3630at 494.508 kb on + strand, within GFF3630at 494.508 kb on + strand, within GFF3630at 494.508 kb on + strand, within GFF3630at 494.508 kb on + strand, within GFF3630at 494.508 kb on + strand, within GFF3630at 494.508 kb on + strand, within GFF3630at 494.508 kb on + strand, within GFF3630at 494.509 kb on - strand, within GFF3630at 494.509 kb on - strand, within GFF3630at 494.509 kb on - strand, within GFF3630at 494.509 kb on - strand, within GFF3630at 494.509 kb on - strand, within GFF3630at 494.509 kb on - strand, within GFF3630at 494.509 kb on - strand, within GFF3630at 494.526 kb on + strand, within GFF3630at 494.526 kb on + strand, within GFF3630at 494.526 kb on + strand, within GFF3630at 494.645 kb on + strand, within GFF3630at 494.645 kb on + strand, within GFF3630at 494.646 kb on - strand, within GFF3630at 494.646 kb on - strand, within GFF3630at 494.767 kb on + strand, within GFF3630at 494.767 kb on + strand, within GFF3630at 494.767 kb on + strand, within GFF3630at 494.767 kb on + strand, within GFF3630at 494.768 kb on - strand, within GFF3630at 494.785 kb on - strand, within GFF3630at 494.785 kb on - strand, within GFF3630at 494.809 kb on - strand, within GFF3630at 494.809 kb on - strand, within GFF3630at 494.809 kb on - strand, within GFF3630at 494.841 kb on + strand, within GFF3630at 494.841 kb on + strand, within GFF3630at 494.841 kb on + strand, within GFF3630at 494.841 kb on + strand, within GFF3630at 494.841 kb on + strand, within GFF3630at 494.857 kb on + strand, within GFF3630at 495.052 kb on - strand, within GFF3630at 495.052 kb on - strand, within GFF3630at 495.052 kb on - strand, within GFF3630at 495.084 kb on + strand, within GFF3630at 495.084 kb on + strand, within GFF3630at 495.185 kb on + strand, within GFF3630at 495.185 kb on + strand, within GFF3630at 495.306 kb on + strand, within GFF3630

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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492,167 + GFF3627 0.17 -0.3
492,172 - GFF3627 0.18 -0.3
492,173 + GFF3627 0.18 +0.1
492,201 + GFF3627 0.21 -0.6
492,250 - GFF3627 0.27 +0.1
492,302 - GFF3627 0.32 +1.5
492,302 - GFF3627 0.32 -0.4
492,302 - GFF3627 0.32 +1.4
492,302 - GFF3627 0.32 +0.1
492,302 - GFF3627 0.32 -0.2
492,302 - GFF3627 0.32 -0.4
492,303 + GFF3627 0.32 -0.1
492,304 - GFF3627 0.32 -1.2
492,305 + GFF3627 0.33 +0.1
492,306 - GFF3627 0.33 -0.3
492,344 + GFF3627 0.37 -0.3
492,365 - GFF3627 0.39 -1.1
492,365 - GFF3627 0.39 -0.1
492,423 + GFF3627 0.45 +1.4
492,423 + GFF3627 0.45 -0.7
492,424 - GFF3627 0.46 +0.3
492,424 - GFF3627 0.46 -0.5
492,424 - GFF3627 0.46 -0.3
492,427 - GFF3627 0.46 +1.4
492,427 - GFF3627 0.46 +0.2
492,433 - GFF3627 0.47 +0.9
492,465 - GFF3627 0.50 +0.6
492,606 + GFF3627 0.65 +1.1
492,606 + GFF3627 0.65 -0.4
492,606 + GFF3627 0.65 -0.0
492,606 + GFF3627 0.65 -0.2
492,606 + GFF3627 0.65 +1.4
492,607 - GFF3627 0.66 -0.6
492,607 - GFF3627 0.66 +0.4
492,607 - GFF3627 0.66 +1.6
492,612 + GFF3627 0.66 +0.5
492,612 + GFF3627 0.66 +1.0
492,613 - GFF3627 0.66 +0.4
492,613 - GFF3627 0.66 -0.9
492,613 - GFF3627 0.66 +0.5
492,640 + GFF3627 0.69 -0.7
492,641 - GFF3627 0.69 -1.0
492,641 - GFF3627 0.69 +1.4
492,641 - GFF3627 0.69 +1.4
492,706 + GFF3627 0.76 +0.2
492,707 - GFF3627 0.77 -0.4
492,707 - GFF3627 0.77 -1.4
492,707 - GFF3627 0.77 -0.6
492,707 - GFF3627 0.77 -1.0
492,707 - GFF3627 0.77 -0.2
492,707 - GFF3627 0.77 +0.6
492,717 + GFF3627 0.78 -0.8
492,717 + GFF3627 0.78 -1.2
492,718 - GFF3627 0.78 +1.4
492,718 - GFF3627 0.78 -0.6
492,754 - GFF3627 0.82 +1.4
492,793 + GFF3627 0.86 -0.3
492,793 + GFF3627 0.86 -0.8
492,794 - GFF3627 0.86 +0.2
492,794 - GFF3627 0.86 -1.6
492,803 + GFF3627 0.87 +0.0
492,803 + GFF3627 0.87 -0.1
492,804 - GFF3627 0.87 +0.2
492,891 + -0.7
492,891 + -0.9
492,892 - +1.8
492,919 + +0.6
492,920 - -0.0
492,937 + -0.0
492,937 + -0.6
492,938 - +0.5
493,062 + GFF3628 0.58 +0.6
493,062 + GFF3628 0.58 -0.3
493,062 + GFF3628 0.58 -0.8
493,063 - GFF3628 0.59 -0.4
493,063 - GFF3628 0.59 -0.1
493,169 - -0.4
493,169 - -0.2
493,169 - -1.1
493,245 - -0.8
493,411 + GFF3629 0.20 -0.8
493,412 - GFF3629 0.20 +0.4
493,438 + GFF3629 0.22 +0.6
493,438 + GFF3629 0.22 +0.3
493,438 + GFF3629 0.22 +0.3
493,438 + GFF3629 0.22 +0.2
493,438 + GFF3629 0.22 -0.7
493,438 + GFF3629 0.22 -0.3
493,438 + GFF3629 0.22 -1.4
493,438 + GFF3629 0.22 +0.3
493,439 - GFF3629 0.23 +0.4
493,439 - GFF3629 0.23 +0.5
493,439 - GFF3629 0.23 -0.4
493,500 - GFF3629 0.27 -0.3
493,555 + GFF3629 0.32 +1.2
493,555 + GFF3629 0.32 +0.6
493,555 + GFF3629 0.32 -0.6
493,555 + GFF3629 0.32 -0.7
493,556 - GFF3629 0.32 -1.5
493,556 - GFF3629 0.32 +0.2
493,619 + GFF3629 0.37 -1.0
493,619 + GFF3629 0.37 -0.9
493,620 - GFF3629 0.37 +1.3
493,620 - GFF3629 0.37 -0.8
493,667 + GFF3629 0.41 -1.3
493,707 + GFF3629 0.44 -0.9
493,707 + GFF3629 0.44 +0.0
493,707 + GFF3629 0.44 -0.4
493,707 + GFF3629 0.44 +0.1
493,707 + GFF3629 0.44 -0.3
493,707 + GFF3629 0.44 +0.2
493,707 + GFF3629 0.44 +0.3
493,708 - GFF3629 0.44 -0.4
493,751 + GFF3629 0.48 -0.3
493,751 + GFF3629 0.48 +0.4
493,751 + GFF3629 0.48 -0.3
493,751 + GFF3629 0.48 -0.7
493,751 + GFF3629 0.48 -0.4
493,751 + GFF3629 0.48 +0.2
493,751 + GFF3629 0.48 +1.4
493,752 - GFF3629 0.48 -0.4
493,752 - GFF3629 0.48 -0.8
493,752 - GFF3629 0.48 +0.4
493,752 - GFF3629 0.48 -0.2
493,884 + GFF3629 0.58 -0.1
493,884 + GFF3629 0.58 -0.8
493,885 - GFF3629 0.58 +0.9
493,885 - GFF3629 0.58 +0.7
494,113 + GFF3629 0.77 -0.2
494,113 + GFF3629 0.77 -0.6
494,168 - GFF3629 0.81 -0.0
494,168 - GFF3629 0.81 +0.6
494,168 - GFF3629 0.81 +0.4
494,168 - GFF3629 0.81 +0.7
494,212 + GFF3629 0.84 -0.7
494,212 + GFF3629 0.84 +1.1
494,212 + GFF3629 0.84 -0.0
494,213 - GFF3629 0.85 -0.5
494,213 - GFF3629 0.85 -1.2
494,405 + +0.4
494,405 + -0.6
494,405 + -1.7
494,406 - -0.5
494,406 - -0.2
494,406 - -0.2
494,406 - +0.8
494,508 + GFF3630 0.10 -2.1
494,508 + GFF3630 0.10 +1.0
494,508 + GFF3630 0.10 +0.3
494,508 + GFF3630 0.10 +0.4
494,508 + GFF3630 0.10 -1.5
494,508 + GFF3630 0.10 -0.5
494,508 + GFF3630 0.10 -0.6
494,508 + GFF3630 0.10 -1.3
494,508 + GFF3630 0.10 +0.6
494,509 - GFF3630 0.10 -0.1
494,509 - GFF3630 0.10 +0.7
494,509 - GFF3630 0.10 +0.7
494,509 - GFF3630 0.10 +1.1
494,509 - GFF3630 0.10 +0.2
494,509 - GFF3630 0.10 +1.1
494,509 - GFF3630 0.10 -1.4
494,526 + GFF3630 0.12 +0.4
494,526 + GFF3630 0.12 +0.4
494,526 + GFF3630 0.12 +1.6
494,645 + GFF3630 0.23 +0.4
494,645 + GFF3630 0.23 +1.0
494,646 - GFF3630 0.23 -0.9
494,646 - GFF3630 0.23 -0.3
494,767 + GFF3630 0.35 +0.3
494,767 + GFF3630 0.35 -0.8
494,767 + GFF3630 0.35 +0.3
494,767 + GFF3630 0.35 -0.6
494,768 - GFF3630 0.35 +1.6
494,785 - GFF3630 0.36 -0.1
494,785 - GFF3630 0.36 -0.6
494,809 - GFF3630 0.39 -0.8
494,809 - GFF3630 0.39 +0.1
494,809 - GFF3630 0.39 -0.9
494,841 + GFF3630 0.42 -0.0
494,841 + GFF3630 0.42 -1.3
494,841 + GFF3630 0.42 +1.0
494,841 + GFF3630 0.42 +0.3
494,841 + GFF3630 0.42 -0.4
494,857 + GFF3630 0.43 +1.1
495,052 - GFF3630 0.62 -0.7
495,052 - GFF3630 0.62 +0.7
495,052 - GFF3630 0.62 -0.4
495,084 + GFF3630 0.65 +0.0
495,084 + GFF3630 0.65 -1.0
495,185 + GFF3630 0.74 -0.8
495,185 + GFF3630 0.74 +0.1
495,306 + GFF3630 0.86 +0.6

Or see this region's nucleotide sequence