Strain Fitness in Xanthobacter sp. DMC5 around GFF3622

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3621 and GFF3622 are separated by 490 nucleotidesGFF3622 and GFF3623 are separated by 427 nucleotides GFF3621 - Tyrosine recombinase XerC, at 485,829 to 487,133 GFF3621 GFF3622 - hypothetical protein, at 487,624 to 488,907 GFF3622 GFF3623 - Fe(3+) dicitrate transport system permease protein FecD, at 489,335 to 490,330 GFF3623 Position (kb) 487 488 489Strain fitness (log2 ratio) -2 -1 0 1 2at 486.633 kb on + strand, within GFF3621at 486.633 kb on + strand, within GFF3621at 486.633 kb on + strand, within GFF3621at 486.633 kb on + strand, within GFF3621at 486.633 kb on + strand, within GFF3621at 486.633 kb on + strand, within GFF3621at 486.634 kb on - strand, within GFF3621at 486.634 kb on - strand, within GFF3621at 486.733 kb on + strand, within GFF3621at 486.733 kb on + strand, within GFF3621at 486.733 kb on + strand, within GFF3621at 486.733 kb on + strand, within GFF3621at 486.734 kb on - strand, within GFF3621at 486.734 kb on - strand, within GFF3621at 486.734 kb on - strand, within GFF3621at 486.734 kb on - strand, within GFF3621at 486.734 kb on - strand, within GFF3621at 486.734 kb on - strand, within GFF3621at 486.830 kb on + strand, within GFF3621at 486.831 kb on - strand, within GFF3621at 486.831 kb on - strand, within GFF3621at 486.831 kb on - strand, within GFF3621at 486.831 kb on - strand, within GFF3621at 486.994 kb on + strand, within GFF3621at 487.016 kb on + strandat 487.063 kb on + strandat 487.064 kb on - strandat 487.064 kb on - strandat 487.069 kb on + strandat 487.069 kb on + strandat 487.070 kb on - strandat 487.070 kb on - strandat 487.092 kb on + strandat 487.093 kb on - strandat 487.234 kb on - strandat 487.384 kb on + strandat 487.385 kb on - strandat 487.385 kb on - strandat 487.427 kb on + strandat 487.446 kb on + strandat 487.446 kb on + strandat 487.447 kb on - strandat 487.447 kb on - strandat 487.447 kb on - strandat 487.605 kb on + strandat 487.606 kb on - strandat 487.620 kb on + strandat 487.620 kb on + strandat 487.621 kb on - strandat 487.621 kb on - strandat 487.621 kb on - strandat 487.625 kb on + strandat 487.625 kb on + strandat 487.625 kb on + strandat 487.626 kb on - strandat 487.626 kb on - strandat 487.626 kb on - strandat 487.626 kb on - strandat 487.626 kb on - strandat 487.699 kb on + strandat 487.699 kb on + strandat 487.699 kb on + strandat 487.700 kb on - strandat 487.700 kb on - strandat 487.902 kb on + strand, within GFF3622at 487.902 kb on + strand, within GFF3622at 487.957 kb on + strand, within GFF3622at 487.958 kb on - strand, within GFF3622at 487.958 kb on - strand, within GFF3622at 487.958 kb on - strand, within GFF3622at 487.958 kb on - strand, within GFF3622at 487.958 kb on - strand, within GFF3622at 487.958 kb on - strand, within GFF3622at 487.958 kb on - strand, within GFF3622at 488.042 kb on + strand, within GFF3622at 488.043 kb on - strand, within GFF3622at 488.184 kb on + strand, within GFF3622at 488.184 kb on + strand, within GFF3622at 488.184 kb on + strand, within GFF3622at 488.184 kb on + strand, within GFF3622at 488.184 kb on + strand, within GFF3622at 488.184 kb on + strand, within GFF3622at 488.185 kb on - strand, within GFF3622at 488.185 kb on - strand, within GFF3622at 488.185 kb on - strand, within GFF3622at 488.185 kb on - strand, within GFF3622at 488.185 kb on - strand, within GFF3622at 488.185 kb on - strand, within GFF3622at 488.185 kb on - strand, within GFF3622at 488.186 kb on + strand, within GFF3622at 488.186 kb on + strand, within GFF3622at 488.186 kb on + strand, within GFF3622at 488.186 kb on + strand, within GFF3622at 488.186 kb on + strand, within GFF3622at 488.186 kb on + strand, within GFF3622at 488.186 kb on + strand, within GFF3622at 488.187 kb on - strand, within GFF3622at 488.187 kb on - strand, within GFF3622at 488.187 kb on - strand, within GFF3622at 488.187 kb on - strand, within GFF3622at 488.187 kb on - strand, within GFF3622at 488.187 kb on - strand, within GFF3622at 488.187 kb on - strand, within GFF3622at 488.187 kb on - strand, within GFF3622at 488.232 kb on + strand, within GFF3622at 488.232 kb on + strand, within GFF3622at 488.232 kb on + strand, within GFF3622at 488.232 kb on + strand, within GFF3622at 488.232 kb on + strand, within GFF3622at 488.233 kb on - strand, within GFF3622at 488.233 kb on - strand, within GFF3622at 488.233 kb on - strand, within GFF3622at 488.233 kb on - strand, within GFF3622at 488.233 kb on - strand, within GFF3622at 488.233 kb on - strand, within GFF3622at 488.233 kb on - strand, within GFF3622at 488.233 kb on - strand, within GFF3622at 488.233 kb on - strand, within GFF3622at 488.246 kb on + strand, within GFF3622at 488.247 kb on - strand, within GFF3622at 488.247 kb on - strand, within GFF3622at 488.393 kb on + strand, within GFF3622at 488.393 kb on + strand, within GFF3622at 488.393 kb on + strand, within GFF3622at 488.393 kb on + strand, within GFF3622at 488.393 kb on + strand, within GFF3622at 488.394 kb on - strand, within GFF3622at 488.399 kb on + strand, within GFF3622at 488.400 kb on - strand, within GFF3622at 488.400 kb on - strand, within GFF3622at 488.463 kb on + strand, within GFF3622at 488.463 kb on + strand, within GFF3622at 488.464 kb on - strand, within GFF3622at 488.464 kb on - strand, within GFF3622at 488.465 kb on + strand, within GFF3622at 488.465 kb on + strand, within GFF3622at 488.465 kb on + strand, within GFF3622at 488.466 kb on - strand, within GFF3622at 488.466 kb on - strand, within GFF3622at 488.493 kb on - strand, within GFF3622at 488.493 kb on - strand, within GFF3622at 488.581 kb on - strand, within GFF3622at 488.672 kb on + strand, within GFF3622at 488.672 kb on + strand, within GFF3622at 488.682 kb on + strand, within GFF3622at 488.682 kb on + strand, within GFF3622at 488.682 kb on + strand, within GFF3622at 488.682 kb on + strand, within GFF3622at 488.683 kb on - strand, within GFF3622at 488.683 kb on - strand, within GFF3622at 488.683 kb on - strand, within GFF3622at 488.723 kb on + strand, within GFF3622at 488.723 kb on + strand, within GFF3622at 488.723 kb on + strand, within GFF3622at 488.723 kb on + strand, within GFF3622at 488.724 kb on - strand, within GFF3622at 488.724 kb on - strand, within GFF3622at 488.724 kb on - strand, within GFF3622at 488.756 kb on + strand, within GFF3622at 488.756 kb on + strand, within GFF3622at 488.757 kb on - strand, within GFF3622at 488.785 kb on + strandat 488.785 kb on + strandat 488.786 kb on - strandat 488.786 kb on - strandat 488.786 kb on - strandat 488.786 kb on - strandat 488.910 kb on - strandat 488.910 kb on - strandat 488.910 kb on - strandat 488.910 kb on - strandat 488.933 kb on + strandat 488.933 kb on + strandat 488.933 kb on + strandat 488.933 kb on + strandat 488.934 kb on - strandat 489.007 kb on + strandat 489.008 kb on - strandat 489.008 kb on - strandat 489.008 kb on - strandat 489.110 kb on + strandat 489.110 kb on + strandat 489.110 kb on + strandat 489.110 kb on + strandat 489.111 kb on - strandat 489.125 kb on + strandat 489.312 kb on + strandat 489.313 kb on - strandat 489.313 kb on - strandat 489.331 kb on + strandat 489.332 kb on - strandat 489.352 kb on + strandat 489.353 kb on - strandat 489.417 kb on - strandat 489.417 kb on - strandat 489.454 kb on - strand, within GFF3623at 489.454 kb on - strand, within GFF3623at 489.475 kb on - strand, within GFF3623at 489.543 kb on + strand, within GFF3623at 489.543 kb on + strand, within GFF3623at 489.544 kb on - strand, within GFF3623at 489.650 kb on + strand, within GFF3623at 489.650 kb on + strand, within GFF3623at 489.650 kb on + strand, within GFF3623at 489.651 kb on - strand, within GFF3623at 489.651 kb on - strand, within GFF3623at 489.651 kb on - strand, within GFF3623at 489.651 kb on - strand, within GFF3623at 489.651 kb on - strand, within GFF3623at 489.651 kb on - strand, within GFF3623at 489.691 kb on - strand, within GFF3623at 489.845 kb on + strand, within GFF3623at 489.845 kb on + strand, within GFF3623at 489.845 kb on + strand, within GFF3623at 489.846 kb on - strand, within GFF3623at 489.846 kb on - strand, within GFF3623at 489.882 kb on + strand, within GFF3623at 489.882 kb on + strand, within GFF3623at 489.883 kb on - strand, within GFF3623at 489.883 kb on - strand, within GFF3623

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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486,633 + GFF3621 0.62 -0.6
486,633 + GFF3621 0.62 +0.1
486,633 + GFF3621 0.62 -0.2
486,633 + GFF3621 0.62 +0.5
486,633 + GFF3621 0.62 -0.4
486,633 + GFF3621 0.62 -0.8
486,634 - GFF3621 0.62 +0.8
486,634 - GFF3621 0.62 +0.2
486,733 + GFF3621 0.69 +1.0
486,733 + GFF3621 0.69 -0.2
486,733 + GFF3621 0.69 -0.4
486,733 + GFF3621 0.69 -1.4
486,734 - GFF3621 0.69 -0.1
486,734 - GFF3621 0.69 -0.6
486,734 - GFF3621 0.69 -0.4
486,734 - GFF3621 0.69 -0.2
486,734 - GFF3621 0.69 -0.7
486,734 - GFF3621 0.69 +0.5
486,830 + GFF3621 0.77 +0.6
486,831 - GFF3621 0.77 +1.6
486,831 - GFF3621 0.77 -0.9
486,831 - GFF3621 0.77 -1.7
486,831 - GFF3621 0.77 -0.1
486,994 + GFF3621 0.89 +0.6
487,016 + -0.1
487,063 + -0.0
487,064 - +0.6
487,064 - -0.6
487,069 + -0.5
487,069 + +0.1
487,070 - +0.4
487,070 - +0.4
487,092 + +0.2
487,093 - +0.1
487,234 - -1.1
487,384 + -0.1
487,385 - -1.0
487,385 - -0.9
487,427 + -0.5
487,446 + +0.5
487,446 + -0.7
487,447 - -0.1
487,447 - +0.9
487,447 - +0.2
487,605 + -1.8
487,606 - +0.9
487,620 + -1.0
487,620 + -2.1
487,621 - -0.7
487,621 - +0.2
487,621 - -0.0
487,625 + -0.6
487,625 + -0.4
487,625 + -0.9
487,626 - +0.9
487,626 - -1.1
487,626 - -0.4
487,626 - -1.1
487,626 - +0.2
487,699 + +0.5
487,699 + -0.7
487,699 + +0.2
487,700 - -0.3
487,700 - +0.7
487,902 + GFF3622 0.22 +0.1
487,902 + GFF3622 0.22 +0.8
487,957 + GFF3622 0.26 -0.7
487,958 - GFF3622 0.26 -1.0
487,958 - GFF3622 0.26 +0.3
487,958 - GFF3622 0.26 -0.1
487,958 - GFF3622 0.26 -0.8
487,958 - GFF3622 0.26 +0.6
487,958 - GFF3622 0.26 -0.3
487,958 - GFF3622 0.26 +0.1
488,042 + GFF3622 0.33 +1.0
488,043 - GFF3622 0.33 +0.9
488,184 + GFF3622 0.44 -1.6
488,184 + GFF3622 0.44 -1.8
488,184 + GFF3622 0.44 -0.1
488,184 + GFF3622 0.44 +0.3
488,184 + GFF3622 0.44 -0.9
488,184 + GFF3622 0.44 -1.2
488,185 - GFF3622 0.44 -0.0
488,185 - GFF3622 0.44 +0.4
488,185 - GFF3622 0.44 -0.5
488,185 - GFF3622 0.44 +0.1
488,185 - GFF3622 0.44 -0.2
488,185 - GFF3622 0.44 -0.4
488,185 - GFF3622 0.44 -0.1
488,186 + GFF3622 0.44 +0.4
488,186 + GFF3622 0.44 -0.3
488,186 + GFF3622 0.44 +0.4
488,186 + GFF3622 0.44 -1.3
488,186 + GFF3622 0.44 -1.9
488,186 + GFF3622 0.44 +0.8
488,186 + GFF3622 0.44 -0.6
488,187 - GFF3622 0.44 +0.1
488,187 - GFF3622 0.44 +0.1
488,187 - GFF3622 0.44 -0.4
488,187 - GFF3622 0.44 -0.4
488,187 - GFF3622 0.44 -0.9
488,187 - GFF3622 0.44 -1.7
488,187 - GFF3622 0.44 -0.9
488,187 - GFF3622 0.44 +0.3
488,232 + GFF3622 0.47 -0.9
488,232 + GFF3622 0.47 -0.6
488,232 + GFF3622 0.47 +0.2
488,232 + GFF3622 0.47 +0.2
488,232 + GFF3622 0.47 +0.3
488,233 - GFF3622 0.47 -0.5
488,233 - GFF3622 0.47 +0.4
488,233 - GFF3622 0.47 -0.6
488,233 - GFF3622 0.47 -0.0
488,233 - GFF3622 0.47 +0.2
488,233 - GFF3622 0.47 -0.4
488,233 - GFF3622 0.47 +0.4
488,233 - GFF3622 0.47 +0.5
488,233 - GFF3622 0.47 +1.4
488,246 + GFF3622 0.48 +0.1
488,247 - GFF3622 0.49 -0.9
488,247 - GFF3622 0.49 +0.0
488,393 + GFF3622 0.60 -0.3
488,393 + GFF3622 0.60 -0.5
488,393 + GFF3622 0.60 +1.3
488,393 + GFF3622 0.60 +0.2
488,393 + GFF3622 0.60 +1.8
488,394 - GFF3622 0.60 +0.5
488,399 + GFF3622 0.60 -0.7
488,400 - GFF3622 0.60 +0.6
488,400 - GFF3622 0.60 +0.1
488,463 + GFF3622 0.65 -0.1
488,463 + GFF3622 0.65 -0.9
488,464 - GFF3622 0.65 -0.3
488,464 - GFF3622 0.65 -1.2
488,465 + GFF3622 0.65 +0.6
488,465 + GFF3622 0.65 +1.1
488,465 + GFF3622 0.65 -0.2
488,466 - GFF3622 0.66 +1.3
488,466 - GFF3622 0.66 +0.8
488,493 - GFF3622 0.68 +0.9
488,493 - GFF3622 0.68 -0.6
488,581 - GFF3622 0.75 +0.5
488,672 + GFF3622 0.82 +0.6
488,672 + GFF3622 0.82 -0.6
488,682 + GFF3622 0.82 -1.2
488,682 + GFF3622 0.82 +0.7
488,682 + GFF3622 0.82 +0.5
488,682 + GFF3622 0.82 +0.1
488,683 - GFF3622 0.82 +0.0
488,683 - GFF3622 0.82 -1.1
488,683 - GFF3622 0.82 +0.6
488,723 + GFF3622 0.86 -0.1
488,723 + GFF3622 0.86 +0.3
488,723 + GFF3622 0.86 +0.5
488,723 + GFF3622 0.86 -0.5
488,724 - GFF3622 0.86 +0.5
488,724 - GFF3622 0.86 -2.1
488,724 - GFF3622 0.86 -0.5
488,756 + GFF3622 0.88 +0.6
488,756 + GFF3622 0.88 +0.6
488,757 - GFF3622 0.88 -1.1
488,785 + -1.1
488,785 + +0.5
488,786 - -0.6
488,786 - -0.4
488,786 - +0.4
488,786 - -0.0
488,910 - +0.5
488,910 - +0.4
488,910 - +1.3
488,910 - -0.6
488,933 + +0.2
488,933 + +1.4
488,933 + -0.2
488,933 + +0.4
488,934 - +0.4
489,007 + -0.0
489,008 - +0.2
489,008 - +0.4
489,008 - -0.4
489,110 + -0.5
489,110 + -0.8
489,110 + -0.4
489,110 + +0.2
489,111 - -1.3
489,125 + -0.5
489,312 + -0.8
489,313 - +0.4
489,313 - +0.6
489,331 + -0.0
489,332 - -1.5
489,352 + +0.4
489,353 - -0.3
489,417 - -0.7
489,417 - +0.2
489,454 - GFF3623 0.12 +0.4
489,454 - GFF3623 0.12 +0.8
489,475 - GFF3623 0.14 +0.8
489,543 + GFF3623 0.21 -1.5
489,543 + GFF3623 0.21 +0.9
489,544 - GFF3623 0.21 +0.1
489,650 + GFF3623 0.32 -0.3
489,650 + GFF3623 0.32 +1.2
489,650 + GFF3623 0.32 +0.7
489,651 - GFF3623 0.32 +0.2
489,651 - GFF3623 0.32 +0.1
489,651 - GFF3623 0.32 +0.3
489,651 - GFF3623 0.32 +1.7
489,651 - GFF3623 0.32 +0.4
489,651 - GFF3623 0.32 -0.2
489,691 - GFF3623 0.36 -0.1
489,845 + GFF3623 0.51 -0.4
489,845 + GFF3623 0.51 +0.1
489,845 + GFF3623 0.51 +0.7
489,846 - GFF3623 0.51 -0.9
489,846 - GFF3623 0.51 +0.1
489,882 + GFF3623 0.55 -0.1
489,882 + GFF3623 0.55 -0.6
489,883 - GFF3623 0.55 +1.6
489,883 - GFF3623 0.55 +0.1

Or see this region's nucleotide sequence