Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3618 and GFF3619 are separated by 2 nucleotides GFF3619 and GFF3620 overlap by 11 nucleotides GFF3620 and GFF3621 are separated by 613 nucleotides
GFF3618 - hypothetical protein, at 482,795 to 484,603
GFF3618
GFF3619 - hypothetical protein, at 484,606 to 485,007
GFF3619
GFF3620 - hypothetical protein, at 484,997 to 485,215
GFF3620
GFF3621 - Tyrosine recombinase XerC, at 485,829 to 487,133
GFF3621
Position (kb) 484
485
486 Strain fitness (log2 ratio) -2
-1
0
1
2 at 483.714 kb on + strand, within GFF3618 at 483.757 kb on - strand, within GFF3618 at 483.757 kb on - strand, within GFF3618 at 483.757 kb on - strand, within GFF3618 at 483.757 kb on - strand, within GFF3618 at 483.757 kb on - strand, within GFF3618 at 483.757 kb on - strand, within GFF3618 at 483.908 kb on - strand, within GFF3618 at 483.908 kb on - strand, within GFF3618 at 483.910 kb on - strand, within GFF3618 at 483.910 kb on - strand, within GFF3618 at 483.910 kb on - strand, within GFF3618 at 483.910 kb on - strand, within GFF3618 at 484.026 kb on + strand, within GFF3618 at 484.026 kb on + strand, within GFF3618 at 484.062 kb on + strand, within GFF3618 at 484.062 kb on + strand, within GFF3618 at 484.062 kb on + strand, within GFF3618 at 484.062 kb on + strand, within GFF3618 at 484.062 kb on + strand, within GFF3618 at 484.062 kb on + strand, within GFF3618 at 484.063 kb on - strand, within GFF3618 at 484.063 kb on - strand, within GFF3618 at 484.063 kb on - strand, within GFF3618 at 484.063 kb on - strand, within GFF3618 at 484.098 kb on + strand, within GFF3618 at 484.098 kb on + strand, within GFF3618 at 484.098 kb on + strand, within GFF3618 at 484.098 kb on + strand, within GFF3618 at 484.099 kb on - strand, within GFF3618 at 484.099 kb on - strand, within GFF3618 at 484.099 kb on - strand, within GFF3618 at 484.099 kb on - strand, within GFF3618 at 484.101 kb on + strand, within GFF3618 at 484.101 kb on + strand, within GFF3618 at 484.101 kb on + strand, within GFF3618 at 484.101 kb on + strand, within GFF3618 at 484.101 kb on + strand, within GFF3618 at 484.102 kb on - strand, within GFF3618 at 484.102 kb on - strand, within GFF3618 at 484.102 kb on - strand, within GFF3618 at 484.102 kb on - strand, within GFF3618 at 484.102 kb on - strand, within GFF3618 at 484.293 kb on + strand, within GFF3618 at 484.293 kb on + strand, within GFF3618 at 484.616 kb on - strand at 484.667 kb on + strand, within GFF3619 at 484.800 kb on - strand, within GFF3619 at 485.020 kb on + strand, within GFF3620 at 485.020 kb on + strand, within GFF3620 at 485.021 kb on - strand, within GFF3620 at 485.021 kb on - strand, within GFF3620 at 485.021 kb on - strand, within GFF3620 at 485.021 kb on - strand, within GFF3620 at 485.021 kb on - strand, within GFF3620 at 485.029 kb on + strand, within GFF3620 at 485.029 kb on + strand, within GFF3620 at 485.030 kb on - strand, within GFF3620 at 485.030 kb on - strand, within GFF3620 at 485.079 kb on + strand, within GFF3620 at 485.152 kb on + strand, within GFF3620 at 485.166 kb on + strand, within GFF3620 at 485.166 kb on + strand, within GFF3620 at 485.215 kb on + strand at 485.215 kb on + strand at 485.231 kb on - strand at 485.237 kb on + strand at 485.237 kb on + strand at 485.237 kb on + strand at 485.238 kb on - strand at 485.238 kb on - strand at 485.238 kb on - strand at 485.354 kb on - strand at 485.373 kb on + strand at 485.374 kb on - strand at 485.374 kb on - strand at 485.399 kb on + strand at 485.430 kb on + strand at 485.449 kb on + strand at 485.449 kb on + strand at 485.468 kb on - strand at 485.522 kb on - strand at 485.543 kb on - strand at 485.586 kb on + strand at 485.601 kb on + strand at 485.601 kb on + strand at 485.602 kb on - strand at 485.602 kb on - strand at 485.603 kb on + strand at 485.604 kb on - strand at 485.604 kb on - strand at 485.699 kb on + strand at 485.699 kb on + strand at 485.699 kb on + strand at 485.700 kb on - strand at 485.700 kb on - strand at 485.700 kb on - strand at 485.731 kb on + strand at 485.745 kb on + strand at 485.748 kb on - strand at 485.760 kb on + strand at 485.761 kb on - strand at 485.761 kb on - strand at 485.761 kb on - strand at 485.775 kb on + strand at 485.776 kb on - strand at 485.776 kb on - strand at 485.776 kb on - strand at 485.882 kb on - strand at 485.904 kb on + strand at 485.905 kb on - strand at 485.905 kb on - strand at 485.962 kb on + strand, within GFF3621 at 485.963 kb on - strand, within GFF3621 at 485.963 kb on - strand, within GFF3621 at 485.963 kb on - strand, within GFF3621
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 483,714 + GFF3618 0.51 -0.4 483,757 - GFF3618 0.53 -0.7 483,757 - GFF3618 0.53 -0.4 483,757 - GFF3618 0.53 -0.1 483,757 - GFF3618 0.53 +0.6 483,757 - GFF3618 0.53 -0.6 483,757 - GFF3618 0.53 -0.2 483,908 - GFF3618 0.62 -1.6 483,908 - GFF3618 0.62 -0.7 483,910 - GFF3618 0.62 +0.3 483,910 - GFF3618 0.62 -0.5 483,910 - GFF3618 0.62 +1.1 483,910 - GFF3618 0.62 -0.8 484,026 + GFF3618 0.68 +0.7 484,026 + GFF3618 0.68 -0.7 484,062 + GFF3618 0.70 +0.4 484,062 + GFF3618 0.70 +1.7 484,062 + GFF3618 0.70 +0.8 484,062 + GFF3618 0.70 -0.5 484,062 + GFF3618 0.70 -0.5 484,062 + GFF3618 0.70 -0.1 484,063 - GFF3618 0.70 -0.1 484,063 - GFF3618 0.70 +0.2 484,063 - GFF3618 0.70 +0.4 484,063 - GFF3618 0.70 +0.1 484,098 + GFF3618 0.72 +0.1 484,098 + GFF3618 0.72 -0.2 484,098 + GFF3618 0.72 -0.2 484,098 + GFF3618 0.72 +0.1 484,099 - GFF3618 0.72 +0.6 484,099 - GFF3618 0.72 -1.0 484,099 - GFF3618 0.72 -0.8 484,099 - GFF3618 0.72 -0.3 484,101 + GFF3618 0.72 +0.1 484,101 + GFF3618 0.72 -1.3 484,101 + GFF3618 0.72 +0.1 484,101 + GFF3618 0.72 +0.2 484,101 + GFF3618 0.72 +0.3 484,102 - GFF3618 0.72 +0.1 484,102 - GFF3618 0.72 -0.8 484,102 - GFF3618 0.72 -0.0 484,102 - GFF3618 0.72 +0.4 484,102 - GFF3618 0.72 -0.5 484,293 + GFF3618 0.83 -0.7 484,293 + GFF3618 0.83 +0.3 484,616 - -1.9 484,667 + GFF3619 0.15 -0.8 484,800 - GFF3619 0.48 -0.6 485,020 + GFF3620 0.11 -1.4 485,020 + GFF3620 0.11 -0.2 485,021 - GFF3620 0.11 -1.0 485,021 - GFF3620 0.11 +0.1 485,021 - GFF3620 0.11 +0.1 485,021 - GFF3620 0.11 -0.5 485,021 - GFF3620 0.11 -0.6 485,029 + GFF3620 0.15 +0.3 485,029 + GFF3620 0.15 +0.5 485,030 - GFF3620 0.15 +0.0 485,030 - GFF3620 0.15 -0.8 485,079 + GFF3620 0.37 +0.4 485,152 + GFF3620 0.71 -0.9 485,166 + GFF3620 0.77 +0.4 485,166 + GFF3620 0.77 +0.7 485,215 + -0.7 485,215 + +0.5 485,231 - -1.0 485,237 + -0.0 485,237 + -0.5 485,237 + +0.7 485,238 - -1.1 485,238 - -0.9 485,238 - +0.1 485,354 - +1.8 485,373 + +0.6 485,374 - +0.3 485,374 - +1.1 485,399 + -0.4 485,430 + +0.1 485,449 + -0.5 485,449 + -2.0 485,468 - -0.5 485,522 - -1.2 485,543 - +1.5 485,586 + +0.3 485,601 + -1.1 485,601 + -1.6 485,602 - -0.9 485,602 - +0.1 485,603 + +0.1 485,604 - +0.7 485,604 - +0.9 485,699 + +0.6 485,699 + +0.4 485,699 + +0.3 485,700 - -0.6 485,700 - +1.4 485,700 - +2.0 485,731 + +0.2 485,745 + -0.8 485,748 - +0.6 485,760 + +0.7 485,761 - -0.2 485,761 - +0.1 485,761 - +1.4 485,775 + -0.6 485,776 - -0.7 485,776 - -0.9 485,776 - -0.7 485,882 - +1.2 485,904 + +1.2 485,905 - -1.0 485,905 - +1.2 485,962 + GFF3621 0.10 +1.1 485,963 - GFF3621 0.10 +1.0 485,963 - GFF3621 0.10 -0.4 485,963 - GFF3621 0.10 +0.4
Or see this region's nucleotide sequence