Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3602 and GFF3603 overlap by 14 nucleotides GFF3603 and GFF3604 are separated by 166 nucleotides GFF3604 and GFF3605 are separated by 2 nucleotides GFF3605 and GFF3606 are separated by 370 nucleotides
GFF3602 - hypothetical protein, at 464,281 to 465,393
GFF3602
GFF3603 - hypothetical protein, at 465,380 to 466,186
GFF3603
GFF3604 - hypothetical protein, at 466,353 to 466,805
GFF3604
GFF3605 - hypothetical protein, at 466,808 to 467,383
GFF3605
GFF3606 - hypothetical protein, at 467,754 to 468,341
GFF3606
Position (kb) 466
467 Strain fitness (log2 ratio) -2
-1
0
1
2 at 465.455 kb on + strand at 465.600 kb on - strand, within GFF3603 at 465.638 kb on - strand, within GFF3603 at 465.667 kb on - strand, within GFF3603 at 465.776 kb on - strand, within GFF3603 at 465.951 kb on + strand, within GFF3603 at 465.952 kb on - strand, within GFF3603 at 465.952 kb on - strand, within GFF3603 at 465.952 kb on - strand, within GFF3603 at 465.989 kb on + strand, within GFF3603 at 466.052 kb on + strand, within GFF3603 at 466.053 kb on - strand, within GFF3603 at 466.071 kb on - strand, within GFF3603 at 466.121 kb on + strand at 466.121 kb on + strand at 466.175 kb on + strand at 466.176 kb on - strand at 466.344 kb on + strand at 466.439 kb on + strand, within GFF3604 at 466.439 kb on + strand, within GFF3604 at 466.439 kb on + strand, within GFF3604 at 466.439 kb on + strand, within GFF3604 at 466.440 kb on - strand, within GFF3604 at 466.440 kb on - strand, within GFF3604 at 466.574 kb on + strand, within GFF3604 at 466.616 kb on + strand, within GFF3604 at 466.631 kb on - strand, within GFF3604 at 466.717 kb on + strand, within GFF3604 at 466.717 kb on + strand, within GFF3604 at 466.741 kb on - strand, within GFF3604 at 466.792 kb on + strand at 466.792 kb on + strand at 466.792 kb on + strand at 466.792 kb on + strand at 466.792 kb on + strand at 466.792 kb on + strand at 466.793 kb on - strand at 466.793 kb on - strand at 466.827 kb on + strand at 466.827 kb on + strand at 466.827 kb on + strand at 466.827 kb on + strand at 466.828 kb on - strand at 466.828 kb on - strand at 466.828 kb on - strand at 467.019 kb on + strand, within GFF3605 at 467.019 kb on + strand, within GFF3605 at 467.019 kb on + strand, within GFF3605 at 467.019 kb on + strand, within GFF3605 at 467.089 kb on - strand, within GFF3605 at 467.089 kb on - strand, within GFF3605 at 467.121 kb on + strand, within GFF3605 at 467.121 kb on + strand, within GFF3605 at 467.122 kb on - strand, within GFF3605 at 467.292 kb on + strand, within GFF3605 at 467.292 kb on + strand, within GFF3605 at 467.292 kb on + strand, within GFF3605 at 467.292 kb on + strand, within GFF3605 at 467.292 kb on + strand, within GFF3605 at 467.292 kb on + strand, within GFF3605 at 467.292 kb on + strand, within GFF3605 at 467.293 kb on - strand, within GFF3605 at 467.337 kb on + strand at 467.337 kb on + strand at 467.338 kb on - strand at 467.338 kb on - strand at 467.338 kb on - strand at 467.378 kb on - strand at 467.532 kb on + strand at 467.532 kb on + strand at 467.532 kb on + strand at 467.533 kb on - strand at 467.533 kb on - strand at 467.580 kb on - strand at 467.580 kb on - strand at 467.735 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 465,455 + -0.0 465,600 - GFF3603 0.27 -0.6 465,638 - GFF3603 0.32 -0.9 465,667 - GFF3603 0.36 +0.5 465,776 - GFF3603 0.49 +1.4 465,951 + GFF3603 0.71 +0.2 465,952 - GFF3603 0.71 -0.0 465,952 - GFF3603 0.71 -0.9 465,952 - GFF3603 0.71 +1.2 465,989 + GFF3603 0.75 +0.6 466,052 + GFF3603 0.83 +0.1 466,053 - GFF3603 0.83 +0.5 466,071 - GFF3603 0.86 -0.1 466,121 + -0.2 466,121 + -0.7 466,175 + -1.3 466,176 - +0.8 466,344 + +1.0 466,439 + GFF3604 0.19 +0.4 466,439 + GFF3604 0.19 -0.1 466,439 + GFF3604 0.19 -0.2 466,439 + GFF3604 0.19 -0.4 466,440 - GFF3604 0.19 -0.6 466,440 - GFF3604 0.19 -1.8 466,574 + GFF3604 0.49 -0.3 466,616 + GFF3604 0.58 +0.4 466,631 - GFF3604 0.61 +0.2 466,717 + GFF3604 0.80 +0.6 466,717 + GFF3604 0.80 +0.6 466,741 - GFF3604 0.86 -1.3 466,792 + +0.6 466,792 + +0.3 466,792 + +1.2 466,792 + +0.1 466,792 + +0.2 466,792 + -0.3 466,793 - +0.6 466,793 - -0.7 466,827 + -1.2 466,827 + -0.1 466,827 + +0.0 466,827 + +1.3 466,828 - +1.0 466,828 - -1.0 466,828 - -0.8 467,019 + GFF3605 0.37 -0.5 467,019 + GFF3605 0.37 -0.3 467,019 + GFF3605 0.37 -1.0 467,019 + GFF3605 0.37 -0.5 467,089 - GFF3605 0.49 +0.7 467,089 - GFF3605 0.49 +2.0 467,121 + GFF3605 0.54 +0.2 467,121 + GFF3605 0.54 -0.5 467,122 - GFF3605 0.55 -0.2 467,292 + GFF3605 0.84 +1.0 467,292 + GFF3605 0.84 +0.9 467,292 + GFF3605 0.84 -0.8 467,292 + GFF3605 0.84 -1.3 467,292 + GFF3605 0.84 -1.2 467,292 + GFF3605 0.84 -0.1 467,292 + GFF3605 0.84 -0.2 467,293 - GFF3605 0.84 -0.2 467,337 + +0.5 467,337 + +0.4 467,338 - -0.1 467,338 - +0.1 467,338 - -0.8 467,378 - -0.5 467,532 + -0.2 467,532 + +0.6 467,532 + +0.1 467,533 - +0.5 467,533 - +0.4 467,580 - +1.4 467,580 - +0.1 467,735 + +1.8
Or see this region's nucleotide sequence