Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3599 and GFF3600 are separated by 425 nucleotides GFF3600 and GFF3601 are separated by 337 nucleotides
GFF3599 - hypothetical protein, at 460,203 to 460,676
GFF3599
GFF3600 - hypothetical protein, at 461,102 to 461,695
GFF3600
GFF3601 - hypothetical protein, at 462,033 to 463,754
GFF3601
Position (kb) 461
462 Strain fitness (log2 ratio) -2
-1
0
1
2 at 460.177 kb on - strand at 460.428 kb on + strand, within GFF3599 at 460.428 kb on + strand, within GFF3599 at 460.428 kb on + strand, within GFF3599 at 460.429 kb on - strand, within GFF3599 at 460.429 kb on - strand, within GFF3599 at 460.429 kb on - strand, within GFF3599 at 460.521 kb on + strand, within GFF3599 at 460.521 kb on + strand, within GFF3599 at 460.522 kb on - strand, within GFF3599 at 460.522 kb on - strand, within GFF3599 at 460.522 kb on - strand, within GFF3599 at 460.960 kb on + strand at 460.965 kb on + strand at 460.981 kb on + strand at 460.982 kb on - strand at 460.982 kb on - strand at 461.143 kb on + strand at 461.159 kb on + strand at 461.159 kb on + strand at 461.160 kb on - strand at 461.160 kb on - strand at 461.563 kb on + strand, within GFF3600 at 461.563 kb on + strand, within GFF3600 at 461.564 kb on - strand, within GFF3600 at 461.565 kb on + strand, within GFF3600 at 461.565 kb on + strand, within GFF3600 at 461.565 kb on + strand, within GFF3600 at 461.566 kb on - strand, within GFF3600 at 461.566 kb on - strand, within GFF3600 at 461.612 kb on - strand, within GFF3600 at 461.616 kb on + strand, within GFF3600 at 461.661 kb on + strand at 461.661 kb on + strand at 461.661 kb on + strand at 461.707 kb on + strand at 461.707 kb on + strand at 461.707 kb on + strand at 461.708 kb on - strand at 461.708 kb on - strand at 461.708 kb on - strand at 461.708 kb on - strand at 461.708 kb on - strand at 461.708 kb on - strand at 461.870 kb on - strand at 461.974 kb on + strand at 461.974 kb on + strand at 461.974 kb on + strand at 461.975 kb on - strand at 461.975 kb on - strand at 461.975 kb on - strand at 461.976 kb on + strand at 461.976 kb on + strand at 461.977 kb on - strand at 462.217 kb on + strand, within GFF3601 at 462.217 kb on + strand, within GFF3601 at 462.217 kb on + strand, within GFF3601 at 462.218 kb on - strand, within GFF3601 at 462.218 kb on - strand, within GFF3601 at 462.218 kb on - strand, within GFF3601 at 462.317 kb on + strand, within GFF3601 at 462.317 kb on + strand, within GFF3601 at 462.317 kb on + strand, within GFF3601 at 462.317 kb on + strand, within GFF3601 at 462.318 kb on - strand, within GFF3601 at 462.318 kb on - strand, within GFF3601 at 462.318 kb on - strand, within GFF3601 at 462.331 kb on + strand, within GFF3601 at 462.551 kb on + strand, within GFF3601 at 462.552 kb on - strand, within GFF3601 at 462.647 kb on - strand, within GFF3601 at 462.647 kb on - strand, within GFF3601
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 460,177 - +0.8 460,428 + GFF3599 0.47 +1.0 460,428 + GFF3599 0.47 +0.2 460,428 + GFF3599 0.47 -0.5 460,429 - GFF3599 0.48 -0.3 460,429 - GFF3599 0.48 -0.8 460,429 - GFF3599 0.48 -1.5 460,521 + GFF3599 0.67 -0.7 460,521 + GFF3599 0.67 -1.0 460,522 - GFF3599 0.67 -0.9 460,522 - GFF3599 0.67 -0.1 460,522 - GFF3599 0.67 +0.0 460,960 + +1.3 460,965 + +0.9 460,981 + +0.1 460,982 - -0.0 460,982 - -1.1 461,143 + -0.2 461,159 + -1.6 461,159 + +0.2 461,160 - -0.8 461,160 - +0.3 461,563 + GFF3600 0.78 -0.3 461,563 + GFF3600 0.78 +0.4 461,564 - GFF3600 0.78 -0.4 461,565 + GFF3600 0.78 +0.0 461,565 + GFF3600 0.78 +0.2 461,565 + GFF3600 0.78 +0.3 461,566 - GFF3600 0.78 +0.7 461,566 - GFF3600 0.78 -0.8 461,612 - GFF3600 0.86 -0.7 461,616 + GFF3600 0.87 +0.8 461,661 + -0.0 461,661 + -0.7 461,661 + -0.4 461,707 + +0.1 461,707 + -0.5 461,707 + -0.6 461,708 - -0.3 461,708 - -0.2 461,708 - +0.4 461,708 - +0.6 461,708 - +1.2 461,708 - +0.1 461,870 - -0.1 461,974 + -1.8 461,974 + +0.5 461,974 + -0.2 461,975 - -0.6 461,975 - -0.2 461,975 - +0.2 461,976 + +0.6 461,976 + +0.5 461,977 - -1.2 462,217 + GFF3601 0.11 +1.4 462,217 + GFF3601 0.11 +0.5 462,217 + GFF3601 0.11 +0.2 462,218 - GFF3601 0.11 +0.3 462,218 - GFF3601 0.11 +0.1 462,218 - GFF3601 0.11 -0.0 462,317 + GFF3601 0.16 +0.1 462,317 + GFF3601 0.16 -1.2 462,317 + GFF3601 0.16 -0.5 462,317 + GFF3601 0.16 -0.5 462,318 - GFF3601 0.17 -0.7 462,318 - GFF3601 0.17 +0.7 462,318 - GFF3601 0.17 +0.4 462,331 + GFF3601 0.17 -0.4 462,551 + GFF3601 0.30 +2.4 462,552 - GFF3601 0.30 -0.1 462,647 - GFF3601 0.36 -0.2 462,647 - GFF3601 0.36 +0.8
Or see this region's nucleotide sequence