Strain Fitness in Xanthobacter sp. DMC5 around GFF3579

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3578 and GFF3579 are separated by 191 nucleotidesGFF3579 and GFF3580 are separated by 75 nucleotides GFF3578 - Allantoinase, at 440,665 to 442,005 GFF3578 GFF3579 - hypothetical protein, at 442,197 to 442,421 GFF3579 GFF3580 - Exodeoxyribonuclease 7 large subunit, at 442,497 to 443,948 GFF3580 Position (kb) 442 443Strain fitness (log2 ratio) -1 0 1at 442.252 kb on + strand, within GFF3579at 442.279 kb on + strand, within GFF3579at 442.369 kb on + strand, within GFF3579at 442.370 kb on - strand, within GFF3579

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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442,252 + GFF3579 0.24 -1.0
442,279 + GFF3579 0.36 -0.1
442,369 + GFF3579 0.76 -1.3
442,370 - GFF3579 0.77 +1.0

Or see this region's nucleotide sequence