Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3558 and GFF3559 are separated by 102 nucleotides GFF3559 and GFF3560 are separated by 99 nucleotides GFF3560 and GFF3561 are separated by 15 nucleotides
GFF3558 - hypothetical protein, at 413,807 to 414,316
GFF3558
GFF3559 - hypothetical protein, at 414,419 to 415,162
GFF3559
GFF3560 - NAD-specific glutamate dehydrogenase, at 415,262 to 420,088
GFF3560
GFF3561 - hypothetical protein, at 420,104 to 421,963
GFF3561
Position (kb) 415
416
417
418
419
420
421 Strain fitness (log2 ratio) -1
0
1
2 at 414.338 kb on + strand at 414.338 kb on + strand at 414.338 kb on + strand at 414.451 kb on - strand at 414.451 kb on - strand at 414.451 kb on - strand at 414.666 kb on + strand, within GFF3559 at 414.744 kb on + strand, within GFF3559 at 414.744 kb on + strand, within GFF3559 at 414.745 kb on - strand, within GFF3559 at 414.745 kb on - strand, within GFF3559 at 414.832 kb on + strand, within GFF3559 at 414.833 kb on - strand, within GFF3559 at 414.834 kb on + strand, within GFF3559 at 414.834 kb on + strand, within GFF3559 at 414.834 kb on + strand, within GFF3559 at 414.835 kb on - strand, within GFF3559 at 414.876 kb on + strand, within GFF3559 at 414.876 kb on + strand, within GFF3559 at 414.930 kb on + strand, within GFF3559 at 414.930 kb on + strand, within GFF3559 at 414.930 kb on + strand, within GFF3559 at 414.931 kb on - strand, within GFF3559 at 414.931 kb on - strand, within GFF3559 at 414.931 kb on - strand, within GFF3559 at 415.082 kb on - strand, within GFF3559 at 415.893 kb on - strand, within GFF3560 at 416.180 kb on + strand, within GFF3560 at 416.181 kb on - strand, within GFF3560 at 416.588 kb on + strand, within GFF3560 at 416.853 kb on - strand, within GFF3560 at 417.212 kb on + strand, within GFF3560 at 417.282 kb on - strand, within GFF3560 at 417.545 kb on + strand, within GFF3560 at 418.574 kb on + strand, within GFF3560 at 418.574 kb on + strand, within GFF3560 at 419.169 kb on - strand, within GFF3560 at 419.220 kb on - strand, within GFF3560 at 419.387 kb on + strand, within GFF3560 at 419.388 kb on - strand, within GFF3560 at 419.846 kb on + strand at 419.850 kb on - strand at 419.961 kb on - strand at 420.309 kb on + strand, within GFF3561 at 420.342 kb on + strand, within GFF3561 at 420.343 kb on - strand, within GFF3561 at 420.343 kb on - strand, within GFF3561 at 420.438 kb on + strand, within GFF3561 at 420.438 kb on + strand, within GFF3561 at 420.438 kb on + strand, within GFF3561 at 420.523 kb on + strand, within GFF3561 at 420.524 kb on - strand, within GFF3561 at 420.524 kb on - strand, within GFF3561 at 420.774 kb on + strand, within GFF3561 at 420.775 kb on - strand, within GFF3561 at 420.975 kb on + strand, within GFF3561
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 414,338 + +0.3 414,338 + +0.1 414,338 + -0.6 414,451 - +1.7 414,451 - -1.4 414,451 - +0.4 414,666 + GFF3559 0.33 +0.2 414,744 + GFF3559 0.44 +0.3 414,744 + GFF3559 0.44 -0.4 414,745 - GFF3559 0.44 -0.5 414,745 - GFF3559 0.44 +1.2 414,832 + GFF3559 0.56 -0.0 414,833 - GFF3559 0.56 -0.8 414,834 + GFF3559 0.56 -0.1 414,834 + GFF3559 0.56 +0.2 414,834 + GFF3559 0.56 +0.7 414,835 - GFF3559 0.56 -0.1 414,876 + GFF3559 0.61 +0.2 414,876 + GFF3559 0.61 +2.0 414,930 + GFF3559 0.69 +0.1 414,930 + GFF3559 0.69 -0.3 414,930 + GFF3559 0.69 +1.0 414,931 - GFF3559 0.69 -0.4 414,931 - GFF3559 0.69 +0.2 414,931 - GFF3559 0.69 +0.1 415,082 - GFF3559 0.89 -0.1 415,893 - GFF3560 0.13 +0.4 416,180 + GFF3560 0.19 -0.6 416,181 - GFF3560 0.19 +0.4 416,588 + GFF3560 0.27 +0.4 416,853 - GFF3560 0.33 +1.4 417,212 + GFF3560 0.40 +1.4 417,282 - GFF3560 0.42 +0.4 417,545 + GFF3560 0.47 +1.6 418,574 + GFF3560 0.69 +0.4 418,574 + GFF3560 0.69 +0.4 419,169 - GFF3560 0.81 +0.1 419,220 - GFF3560 0.82 -0.4 419,387 + GFF3560 0.85 +0.4 419,388 - GFF3560 0.85 -0.4 419,846 + +1.4 419,850 - +1.4 419,961 - +0.1 420,309 + GFF3561 0.11 -0.0 420,342 + GFF3561 0.13 -1.5 420,343 - GFF3561 0.13 +0.3 420,343 - GFF3561 0.13 +0.0 420,438 + GFF3561 0.18 +1.6 420,438 + GFF3561 0.18 -0.1 420,438 + GFF3561 0.18 +0.8 420,523 + GFF3561 0.23 -0.3 420,524 - GFF3561 0.23 +0.6 420,524 - GFF3561 0.23 +0.3 420,774 + GFF3561 0.36 +0.4 420,775 - GFF3561 0.36 -0.1 420,975 + GFF3561 0.47 -0.2
Or see this region's nucleotide sequence