Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3550 and GFF3551 overlap by 1 nucleotides GFF3551 and GFF3552 are separated by 45 nucleotides GFF3552 and GFF3553 are separated by 96 nucleotides
GFF3550 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 405,810 to 406,652
GFF3550
GFF3551 - Beta-lactamase OXA-18, at 406,652 to 407,500
GFF3551
GFF3552 - Inner membrane protein YdcO, at 407,546 to 408,691
GFF3552
GFF3553 - hypothetical protein, at 408,788 to 409,777
GFF3553
Position (kb) 407
408
409 Strain fitness (log2 ratio) -2
-1
0
1
2 at 406.878 kb on - strand, within GFF3551 at 406.917 kb on - strand, within GFF3551 at 407.054 kb on + strand, within GFF3551 at 407.054 kb on + strand, within GFF3551 at 407.150 kb on - strand, within GFF3551 at 407.300 kb on + strand, within GFF3551 at 407.400 kb on - strand, within GFF3551 at 407.529 kb on + strand at 407.530 kb on - strand at 408.242 kb on + strand, within GFF3552 at 408.242 kb on + strand, within GFF3552 at 408.242 kb on + strand, within GFF3552 at 408.243 kb on - strand, within GFF3552 at 408.407 kb on + strand, within GFF3552 at 408.407 kb on + strand, within GFF3552 at 408.407 kb on + strand, within GFF3552 at 408.407 kb on + strand, within GFF3552 at 408.407 kb on + strand, within GFF3552 at 408.408 kb on - strand, within GFF3552 at 408.419 kb on + strand, within GFF3552 at 408.419 kb on + strand, within GFF3552 at 408.419 kb on + strand, within GFF3552 at 408.420 kb on - strand, within GFF3552 at 408.420 kb on - strand, within GFF3552 at 408.512 kb on - strand, within GFF3552 at 408.790 kb on - strand at 408.790 kb on - strand at 408.927 kb on + strand, within GFF3553 at 408.927 kb on + strand, within GFF3553 at 408.927 kb on + strand, within GFF3553 at 408.928 kb on - strand, within GFF3553 at 408.928 kb on - strand, within GFF3553 at 409.128 kb on + strand, within GFF3553 at 409.129 kb on - strand, within GFF3553 at 409.221 kb on + strand, within GFF3553 at 409.221 kb on + strand, within GFF3553 at 409.222 kb on - strand, within GFF3553 at 409.222 kb on - strand, within GFF3553 at 409.222 kb on - strand, within GFF3553 at 409.266 kb on + strand, within GFF3553 at 409.266 kb on + strand, within GFF3553 at 409.367 kb on + strand, within GFF3553 at 409.539 kb on + strand, within GFF3553 at 409.539 kb on + strand, within GFF3553 at 409.540 kb on - strand, within GFF3553 at 409.540 kb on - strand, within GFF3553 at 409.540 kb on - strand, within GFF3553 at 409.590 kb on + strand, within GFF3553 at 409.591 kb on - strand, within GFF3553 at 409.642 kb on - strand, within GFF3553 at 409.660 kb on - strand, within GFF3553 at 409.660 kb on - strand, within GFF3553
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 406,878 - GFF3551 0.27 -0.1 406,917 - GFF3551 0.31 -0.6 407,054 + GFF3551 0.47 -0.4 407,054 + GFF3551 0.47 -0.0 407,150 - GFF3551 0.59 +0.8 407,300 + GFF3551 0.76 +1.1 407,400 - GFF3551 0.88 -1.1 407,529 + +0.2 407,530 - -0.1 408,242 + GFF3552 0.61 +1.1 408,242 + GFF3552 0.61 -0.4 408,242 + GFF3552 0.61 -0.6 408,243 - GFF3552 0.61 +0.1 408,407 + GFF3552 0.75 -0.4 408,407 + GFF3552 0.75 -0.6 408,407 + GFF3552 0.75 +0.2 408,407 + GFF3552 0.75 +0.2 408,407 + GFF3552 0.75 -0.0 408,408 - GFF3552 0.75 -1.2 408,419 + GFF3552 0.76 +0.4 408,419 + GFF3552 0.76 +0.1 408,419 + GFF3552 0.76 -1.2 408,420 - GFF3552 0.76 +0.4 408,420 - GFF3552 0.76 +0.2 408,512 - GFF3552 0.84 +0.3 408,790 - -0.2 408,790 - +0.2 408,927 + GFF3553 0.14 -0.6 408,927 + GFF3553 0.14 -0.1 408,927 + GFF3553 0.14 -0.6 408,928 - GFF3553 0.14 -0.4 408,928 - GFF3553 0.14 -0.6 409,128 + GFF3553 0.34 -1.1 409,129 - GFF3553 0.34 -0.2 409,221 + GFF3553 0.44 +0.5 409,221 + GFF3553 0.44 +2.4 409,222 - GFF3553 0.44 -1.5 409,222 - GFF3553 0.44 -0.7 409,222 - GFF3553 0.44 +0.4 409,266 + GFF3553 0.48 -0.2 409,266 + GFF3553 0.48 -0.6 409,367 + GFF3553 0.58 -0.3 409,539 + GFF3553 0.76 +0.3 409,539 + GFF3553 0.76 +2.6 409,540 - GFF3553 0.76 +2.6 409,540 - GFF3553 0.76 -1.8 409,540 - GFF3553 0.76 +0.4 409,590 + GFF3553 0.81 -0.8 409,591 - GFF3553 0.81 +0.0 409,642 - GFF3553 0.86 +0.1 409,660 - GFF3553 0.88 +0.3 409,660 - GFF3553 0.88 -1.6
Or see this region's nucleotide sequence