Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3436 and GFF3437 are separated by 230 nucleotides GFF3437 and GFF3438 are separated by 62 nucleotides GFF3438 and GFF3439 are separated by 204 nucleotides GFF3439 and GFF3440 overlap by 1 nucleotides
GFF3436 - Phosphate-import permease protein PhnE, at 288,207 to 289,067
GFF3436
GFF3437 - hypothetical protein, at 289,298 to 289,939
GFF3437
GFF3438 - HTH-type transcriptional repressor NagR, at 290,002 to 290,742
GFF3438
GFF3439 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG, at 290,947 to 291,444
GFF3439
GFF3440 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH, at 291,444 to 292,070
GFF3440
Position (kb) 290
291 Strain fitness (log2 ratio) -2
-1
0
1
2 at 289.302 kb on + strand at 289.302 kb on + strand at 289.503 kb on + strand, within GFF3437 at 289.503 kb on + strand, within GFF3437 at 289.503 kb on + strand, within GFF3437 at 289.503 kb on + strand, within GFF3437 at 289.504 kb on - strand, within GFF3437 at 289.504 kb on - strand, within GFF3437 at 289.504 kb on - strand, within GFF3437 at 289.504 kb on - strand, within GFF3437 at 289.899 kb on + strand at 289.899 kb on + strand at 289.899 kb on + strand at 289.899 kb on + strand at 289.948 kb on - strand at 290.003 kb on + strand at 290.004 kb on - strand at 290.243 kb on + strand, within GFF3438 at 290.243 kb on + strand, within GFF3438 at 290.243 kb on + strand, within GFF3438 at 290.244 kb on - strand, within GFF3438 at 290.244 kb on - strand, within GFF3438 at 290.848 kb on + strand at 291.040 kb on + strand, within GFF3439 at 291.041 kb on - strand, within GFF3439 at 291.244 kb on + strand, within GFF3439 at 291.244 kb on + strand, within GFF3439 at 291.406 kb on + strand at 291.636 kb on + strand, within GFF3440
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 289,302 + -0.1 289,302 + +1.0 289,503 + GFF3437 0.32 +0.2 289,503 + GFF3437 0.32 +0.9 289,503 + GFF3437 0.32 +0.5 289,503 + GFF3437 0.32 -1.0 289,504 - GFF3437 0.32 -0.4 289,504 - GFF3437 0.32 +2.1 289,504 - GFF3437 0.32 +0.4 289,504 - GFF3437 0.32 -0.3 289,899 + -1.2 289,899 + +0.0 289,899 + -0.8 289,899 + -0.1 289,948 - +0.0 290,003 + +0.3 290,004 - -0.3 290,243 + GFF3438 0.33 -0.8 290,243 + GFF3438 0.33 -1.0 290,243 + GFF3438 0.33 +0.1 290,244 - GFF3438 0.33 -1.1 290,244 - GFF3438 0.33 -0.6 290,848 + -0.1 291,040 + GFF3439 0.19 -0.1 291,041 - GFF3439 0.19 -1.8 291,244 + GFF3439 0.60 -0.9 291,244 + GFF3439 0.60 +0.2 291,406 + +0.7 291,636 + GFF3440 0.31 -0.8
Or see this region's nucleotide sequence