Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3423 and GFF3424 are separated by 178 nucleotides GFF3424 and GFF3425 are separated by 31 nucleotides
GFF3423 - Protein tas, at 268,897 to 269,952
GFF3423
GFF3424 - Nitrilotriacetate monooxygenase component A, at 270,131 to 271,483
GFF3424
GFF3425 - putative FMNH2-dependent monooxygenase SfnC, at 271,515 to 272,756
GFF3425
Position (kb) 270
271
272 Strain fitness (log2 ratio) -2
-1
0
1 at 269.185 kb on + strand, within GFF3423 at 269.186 kb on - strand, within GFF3423 at 269.186 kb on - strand, within GFF3423 at 269.275 kb on + strand, within GFF3423 at 269.276 kb on - strand, within GFF3423 at 269.276 kb on - strand, within GFF3423 at 269.276 kb on - strand, within GFF3423 at 269.288 kb on - strand, within GFF3423 at 269.288 kb on - strand, within GFF3423 at 269.288 kb on - strand, within GFF3423 at 269.533 kb on + strand, within GFF3423 at 269.534 kb on - strand, within GFF3423 at 269.534 kb on - strand, within GFF3423 at 269.534 kb on - strand, within GFF3423 at 269.534 kb on - strand, within GFF3423 at 269.609 kb on - strand, within GFF3423 at 269.644 kb on + strand, within GFF3423 at 269.645 kb on - strand, within GFF3423 at 269.740 kb on + strand, within GFF3423 at 269.740 kb on + strand, within GFF3423 at 269.741 kb on - strand, within GFF3423 at 270.051 kb on + strand at 270.052 kb on - strand at 270.182 kb on + strand at 270.183 kb on - strand at 270.243 kb on - strand at 270.438 kb on - strand, within GFF3424 at 270.438 kb on - strand, within GFF3424 at 270.438 kb on - strand, within GFF3424 at 271.071 kb on + strand, within GFF3424 at 271.355 kb on - strand at 271.560 kb on + strand at 271.561 kb on - strand at 271.846 kb on - strand, within GFF3425 at 271.990 kb on - strand, within GFF3425 at 272.054 kb on - strand, within GFF3425 at 272.209 kb on - strand, within GFF3425 at 272.442 kb on + strand, within GFF3425 at 272.442 kb on + strand, within GFF3425 at 272.442 kb on + strand, within GFF3425 at 272.443 kb on - strand, within GFF3425 at 272.443 kb on - strand, within GFF3425 at 272.443 kb on - strand, within GFF3425
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 269,185 + GFF3423 0.27 +1.4 269,186 - GFF3423 0.27 -0.4 269,186 - GFF3423 0.27 -1.0 269,275 + GFF3423 0.36 -0.3 269,276 - GFF3423 0.36 +0.6 269,276 - GFF3423 0.36 +0.3 269,276 - GFF3423 0.36 -0.2 269,288 - GFF3423 0.37 -0.8 269,288 - GFF3423 0.37 -0.1 269,288 - GFF3423 0.37 +0.5 269,533 + GFF3423 0.60 -0.2 269,534 - GFF3423 0.60 +0.1 269,534 - GFF3423 0.60 -0.5 269,534 - GFF3423 0.60 -1.4 269,534 - GFF3423 0.60 +0.2 269,609 - GFF3423 0.67 -0.1 269,644 + GFF3423 0.71 -0.6 269,645 - GFF3423 0.71 +1.7 269,740 + GFF3423 0.80 -1.7 269,740 + GFF3423 0.80 +0.5 269,741 - GFF3423 0.80 -0.5 270,051 + +1.5 270,052 - -0.3 270,182 + +0.7 270,183 - +0.0 270,243 - -1.9 270,438 - GFF3424 0.23 -1.2 270,438 - GFF3424 0.23 -0.8 270,438 - GFF3424 0.23 +0.2 271,071 + GFF3424 0.69 -1.7 271,355 - -0.4 271,560 + +0.0 271,561 - +0.4 271,846 - GFF3425 0.27 -1.0 271,990 - GFF3425 0.38 -0.1 272,054 - GFF3425 0.43 -0.6 272,209 - GFF3425 0.56 +0.6 272,442 + GFF3425 0.75 -0.0 272,442 + GFF3425 0.75 +0.4 272,442 + GFF3425 0.75 +0.3 272,443 - GFF3425 0.75 +0.2 272,443 - GFF3425 0.75 -0.4 272,443 - GFF3425 0.75 -1.0
Or see this region's nucleotide sequence