Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3420 and GFF3421 are separated by 204 nucleotides GFF3421 and GFF3422 are separated by 104 nucleotides GFF3422 and GFF3423 are separated by 60 nucleotides
GFF3420 - Oligopeptide-binding protein AppA, at 265,565 to 267,208
GFF3420
GFF3421 - Alpha-ketoglutarate-dependent sulfate ester dioxygenase, at 267,413 to 268,387
GFF3421
GFF3422 - hypothetical protein, at 268,492 to 268,836
GFF3422
GFF3423 - Protein tas, at 268,897 to 269,952
GFF3423
Position (kb) 267
268
269 Strain fitness (log2 ratio) -1
0
1
2 at 266.490 kb on + strand, within GFF3420 at 266.491 kb on - strand, within GFF3420 at 266.628 kb on + strand, within GFF3420 at 266.628 kb on + strand, within GFF3420 at 266.628 kb on + strand, within GFF3420 at 266.629 kb on - strand, within GFF3420 at 266.629 kb on - strand, within GFF3420 at 266.682 kb on + strand, within GFF3420 at 266.682 kb on + strand, within GFF3420 at 266.683 kb on - strand, within GFF3420 at 266.803 kb on - strand, within GFF3420 at 266.871 kb on + strand, within GFF3420 at 266.871 kb on + strand, within GFF3420 at 266.871 kb on + strand, within GFF3420 at 266.872 kb on - strand, within GFF3420 at 266.940 kb on + strand, within GFF3420 at 266.940 kb on + strand, within GFF3420 at 266.941 kb on - strand, within GFF3420 at 267.531 kb on + strand, within GFF3421 at 267.531 kb on + strand, within GFF3421 at 267.531 kb on + strand, within GFF3421 at 267.532 kb on - strand, within GFF3421 at 267.713 kb on + strand, within GFF3421 at 267.714 kb on - strand, within GFF3421 at 267.714 kb on - strand, within GFF3421 at 267.854 kb on + strand, within GFF3421 at 267.854 kb on + strand, within GFF3421 at 267.893 kb on + strand, within GFF3421 at 267.893 kb on + strand, within GFF3421 at 267.894 kb on - strand, within GFF3421 at 267.931 kb on + strand, within GFF3421 at 267.932 kb on - strand, within GFF3421 at 267.932 kb on - strand, within GFF3421 at 268.068 kb on + strand, within GFF3421 at 268.069 kb on - strand, within GFF3421 at 268.256 kb on + strand, within GFF3421 at 268.256 kb on + strand, within GFF3421 at 268.257 kb on - strand, within GFF3421 at 268.257 kb on - strand, within GFF3421 at 268.558 kb on + strand, within GFF3422 at 268.558 kb on + strand, within GFF3422 at 268.753 kb on + strand, within GFF3422 at 268.754 kb on - strand, within GFF3422 at 268.762 kb on + strand, within GFF3422 at 268.762 kb on + strand, within GFF3422 at 268.763 kb on - strand, within GFF3422 at 269.070 kb on + strand, within GFF3423 at 269.071 kb on - strand, within GFF3423 at 269.185 kb on + strand, within GFF3423 at 269.186 kb on - strand, within GFF3423 at 269.186 kb on - strand, within GFF3423 at 269.275 kb on + strand, within GFF3423 at 269.276 kb on - strand, within GFF3423 at 269.276 kb on - strand, within GFF3423 at 269.276 kb on - strand, within GFF3423 at 269.288 kb on - strand, within GFF3423 at 269.288 kb on - strand, within GFF3423 at 269.288 kb on - strand, within GFF3423
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 266,490 + GFF3420 0.56 +0.3 266,491 - GFF3420 0.56 -1.2 266,628 + GFF3420 0.65 -1.7 266,628 + GFF3420 0.65 -0.5 266,628 + GFF3420 0.65 -0.7 266,629 - GFF3420 0.65 +1.9 266,629 - GFF3420 0.65 +0.8 266,682 + GFF3420 0.68 +0.1 266,682 + GFF3420 0.68 -0.1 266,683 - GFF3420 0.68 +0.9 266,803 - GFF3420 0.75 -0.4 266,871 + GFF3420 0.79 +0.1 266,871 + GFF3420 0.79 +1.2 266,871 + GFF3420 0.79 -1.1 266,872 - GFF3420 0.80 +0.3 266,940 + GFF3420 0.84 -0.4 266,940 + GFF3420 0.84 +0.9 266,941 - GFF3420 0.84 -0.6 267,531 + GFF3421 0.12 -0.6 267,531 + GFF3421 0.12 -0.0 267,531 + GFF3421 0.12 +0.4 267,532 - GFF3421 0.12 -0.5 267,713 + GFF3421 0.31 -0.5 267,714 - GFF3421 0.31 -0.0 267,714 - GFF3421 0.31 +0.9 267,854 + GFF3421 0.45 +1.4 267,854 + GFF3421 0.45 -1.2 267,893 + GFF3421 0.49 -0.2 267,893 + GFF3421 0.49 +0.4 267,894 - GFF3421 0.49 +0.5 267,931 + GFF3421 0.53 -0.2 267,932 - GFF3421 0.53 +0.3 267,932 - GFF3421 0.53 -0.9 268,068 + GFF3421 0.67 -0.6 268,069 - GFF3421 0.67 -0.0 268,256 + GFF3421 0.86 +0.4 268,256 + GFF3421 0.86 +0.1 268,257 - GFF3421 0.87 +0.4 268,257 - GFF3421 0.87 +0.3 268,558 + GFF3422 0.19 -1.1 268,558 + GFF3422 0.19 -0.3 268,753 + GFF3422 0.76 -1.1 268,754 - GFF3422 0.76 -0.2 268,762 + GFF3422 0.78 -0.6 268,762 + GFF3422 0.78 +0.2 268,763 - GFF3422 0.79 +1.1 269,070 + GFF3423 0.16 -0.4 269,071 - GFF3423 0.16 -0.1 269,185 + GFF3423 0.27 +1.4 269,186 - GFF3423 0.27 -0.4 269,186 - GFF3423 0.27 -1.0 269,275 + GFF3423 0.36 -0.3 269,276 - GFF3423 0.36 +0.6 269,276 - GFF3423 0.36 +0.3 269,276 - GFF3423 0.36 -0.2 269,288 - GFF3423 0.37 -0.8 269,288 - GFF3423 0.37 -0.1 269,288 - GFF3423 0.37 +0.5
Or see this region's nucleotide sequence