Strain Fitness in Xanthobacter sp. DMC5 around GFF3414

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3413 and GFF3414 are separated by 114 nucleotidesGFF3414 and GFF3415 are separated by 53 nucleotides GFF3413 - FMNH(2)-dependent dimethylsulfone monooxygenase, at 257,717 to 258,904 GFF3413 GFF3414 - Nitrilotriacetate monooxygenase component A, at 259,019 to 260,389 GFF3414 GFF3415 - hypothetical protein, at 260,443 to 261,576 GFF3415 Position (kb) 259 260 261Strain fitness (log2 ratio) -2 -1 0 1 2 3at 258.019 kb on - strand, within GFF3413at 258.258 kb on + strand, within GFF3413at 258.259 kb on - strand, within GFF3413at 258.279 kb on + strand, within GFF3413at 258.279 kb on + strand, within GFF3413at 258.324 kb on + strand, within GFF3413at 258.324 kb on + strand, within GFF3413at 258.324 kb on + strand, within GFF3413at 258.325 kb on - strand, within GFF3413at 258.534 kb on + strand, within GFF3413at 258.535 kb on - strand, within GFF3413at 258.535 kb on - strand, within GFF3413at 258.535 kb on - strand, within GFF3413at 258.631 kb on - strand, within GFF3413at 258.631 kb on - strand, within GFF3413at 258.714 kb on + strand, within GFF3413at 258.714 kb on + strand, within GFF3413at 258.715 kb on - strand, within GFF3413at 258.715 kb on - strand, within GFF3413at 258.719 kb on + strand, within GFF3413at 258.720 kb on + strand, within GFF3413at 258.720 kb on + strand, within GFF3413at 258.721 kb on - strand, within GFF3413at 258.721 kb on - strand, within GFF3413at 258.721 kb on - strand, within GFF3413at 258.721 kb on - strand, within GFF3413at 258.909 kb on + strandat 258.910 kb on - strandat 258.910 kb on - strandat 258.910 kb on - strandat 258.910 kb on - strandat 259.074 kb on + strandat 259.099 kb on + strandat 259.100 kb on - strandat 259.101 kb on + strandat 259.101 kb on + strandat 259.101 kb on + strandat 259.102 kb on - strandat 259.102 kb on - strandat 259.272 kb on + strand, within GFF3414at 259.272 kb on + strand, within GFF3414at 259.273 kb on - strand, within GFF3414at 259.273 kb on - strand, within GFF3414at 259.543 kb on + strand, within GFF3414at 259.545 kb on + strand, within GFF3414at 259.545 kb on + strand, within GFF3414at 259.545 kb on + strand, within GFF3414at 259.545 kb on + strand, within GFF3414at 259.545 kb on + strand, within GFF3414at 259.545 kb on + strand, within GFF3414at 259.546 kb on - strand, within GFF3414at 259.546 kb on - strand, within GFF3414at 259.546 kb on - strand, within GFF3414at 259.569 kb on + strand, within GFF3414at 259.623 kb on + strand, within GFF3414at 259.624 kb on - strand, within GFF3414at 259.677 kb on + strand, within GFF3414at 259.725 kb on + strand, within GFF3414at 259.725 kb on + strand, within GFF3414at 259.726 kb on - strand, within GFF3414at 259.726 kb on - strand, within GFF3414at 259.726 kb on - strand, within GFF3414at 259.726 kb on - strand, within GFF3414at 259.780 kb on - strand, within GFF3414at 260.037 kb on + strand, within GFF3414at 260.038 kb on - strand, within GFF3414at 260.055 kb on + strand, within GFF3414at 260.055 kb on + strand, within GFF3414at 260.064 kb on + strand, within GFF3414at 260.064 kb on + strand, within GFF3414at 260.065 kb on - strand, within GFF3414at 260.065 kb on - strand, within GFF3414at 260.065 kb on - strand, within GFF3414at 260.065 kb on - strand, within GFF3414at 260.067 kb on + strand, within GFF3414at 260.068 kb on - strand, within GFF3414at 260.163 kb on + strand, within GFF3414at 260.251 kb on - strand, within GFF3414at 260.251 kb on - strand, within GFF3414at 260.568 kb on - strand, within GFF3415at 260.657 kb on + strand, within GFF3415at 260.657 kb on + strand, within GFF3415at 260.658 kb on - strand, within GFF3415at 260.885 kb on + strand, within GFF3415at 260.885 kb on + strand, within GFF3415at 260.885 kb on + strand, within GFF3415at 260.885 kb on + strand, within GFF3415at 260.886 kb on - strand, within GFF3415at 260.921 kb on + strand, within GFF3415at 260.922 kb on - strand, within GFF3415at 260.922 kb on - strand, within GFF3415at 260.922 kb on - strand, within GFF3415at 260.942 kb on + strand, within GFF3415at 260.997 kb on - strand, within GFF3415at 261.096 kb on - strand, within GFF3415at 261.179 kb on + strand, within GFF3415at 261.194 kb on + strand, within GFF3415at 261.194 kb on + strand, within GFF3415at 261.194 kb on + strand, within GFF3415at 261.195 kb on - strand, within GFF3415at 261.311 kb on + strand, within GFF3415at 261.311 kb on + strand, within GFF3415at 261.311 kb on + strand, within GFF3415at 261.311 kb on + strand, within GFF3415at 261.311 kb on + strand, within GFF3415at 261.312 kb on - strand, within GFF3415at 261.371 kb on + strand, within GFF3415

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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258,019 - GFF3413 0.25 +0.5
258,258 + GFF3413 0.46 +0.2
258,259 - GFF3413 0.46 +0.2
258,279 + GFF3413 0.47 -0.1
258,279 + GFF3413 0.47 +0.0
258,324 + GFF3413 0.51 +0.7
258,324 + GFF3413 0.51 +1.5
258,324 + GFF3413 0.51 -0.6
258,325 - GFF3413 0.51 -0.8
258,534 + GFF3413 0.69 +1.1
258,535 - GFF3413 0.69 +0.5
258,535 - GFF3413 0.69 -0.4
258,535 - GFF3413 0.69 +0.4
258,631 - GFF3413 0.77 +0.3
258,631 - GFF3413 0.77 -0.8
258,714 + GFF3413 0.84 -1.4
258,714 + GFF3413 0.84 +0.5
258,715 - GFF3413 0.84 +0.3
258,715 - GFF3413 0.84 +0.5
258,719 + GFF3413 0.84 -0.2
258,720 + GFF3413 0.84 -0.6
258,720 + GFF3413 0.84 -0.4
258,721 - GFF3413 0.85 -0.3
258,721 - GFF3413 0.85 +0.9
258,721 - GFF3413 0.85 -1.2
258,721 - GFF3413 0.85 -0.8
258,909 + +1.1
258,910 - +0.0
258,910 - -0.3
258,910 - -0.6
258,910 - +0.4
259,074 + +0.2
259,099 + +0.8
259,100 - +0.4
259,101 + -0.6
259,101 + -0.5
259,101 + +0.4
259,102 - -0.1
259,102 - -0.8
259,272 + GFF3414 0.18 -0.4
259,272 + GFF3414 0.18 -1.5
259,273 - GFF3414 0.19 -1.1
259,273 - GFF3414 0.19 -0.2
259,543 + GFF3414 0.38 -0.1
259,545 + GFF3414 0.38 +0.8
259,545 + GFF3414 0.38 -0.1
259,545 + GFF3414 0.38 -0.4
259,545 + GFF3414 0.38 -0.3
259,545 + GFF3414 0.38 +0.8
259,545 + GFF3414 0.38 +0.5
259,546 - GFF3414 0.38 -0.8
259,546 - GFF3414 0.38 +0.4
259,546 - GFF3414 0.38 +0.5
259,569 + GFF3414 0.40 -0.1
259,623 + GFF3414 0.44 -0.2
259,624 - GFF3414 0.44 +0.3
259,677 + GFF3414 0.48 +0.7
259,725 + GFF3414 0.51 +0.6
259,725 + GFF3414 0.51 +0.0
259,726 - GFF3414 0.52 -0.8
259,726 - GFF3414 0.52 -1.0
259,726 - GFF3414 0.52 +0.2
259,726 - GFF3414 0.52 +0.5
259,780 - GFF3414 0.56 -0.1
260,037 + GFF3414 0.74 -0.2
260,038 - GFF3414 0.74 -1.9
260,055 + GFF3414 0.76 +0.4
260,055 + GFF3414 0.76 -0.7
260,064 + GFF3414 0.76 +0.1
260,064 + GFF3414 0.76 +0.2
260,065 - GFF3414 0.76 -0.1
260,065 - GFF3414 0.76 +0.4
260,065 - GFF3414 0.76 -0.0
260,065 - GFF3414 0.76 -0.1
260,067 + GFF3414 0.76 -1.3
260,068 - GFF3414 0.77 -1.2
260,163 + GFF3414 0.83 -1.3
260,251 - GFF3414 0.90 +0.8
260,251 - GFF3414 0.90 +0.7
260,568 - GFF3415 0.11 -1.8
260,657 + GFF3415 0.19 +1.0
260,657 + GFF3415 0.19 -0.2
260,658 - GFF3415 0.19 +0.3
260,885 + GFF3415 0.39 -0.2
260,885 + GFF3415 0.39 +0.1
260,885 + GFF3415 0.39 +0.4
260,885 + GFF3415 0.39 -0.8
260,886 - GFF3415 0.39 +0.8
260,921 + GFF3415 0.42 +0.1
260,922 - GFF3415 0.42 -1.3
260,922 - GFF3415 0.42 -0.0
260,922 - GFF3415 0.42 -0.1
260,942 + GFF3415 0.44 -0.4
260,997 - GFF3415 0.49 -0.2
261,096 - GFF3415 0.58 -0.5
261,179 + GFF3415 0.65 +0.1
261,194 + GFF3415 0.66 -0.5
261,194 + GFF3415 0.66 +2.9
261,194 + GFF3415 0.66 -0.0
261,195 - GFF3415 0.66 +0.5
261,311 + GFF3415 0.77 +0.4
261,311 + GFF3415 0.77 -0.0
261,311 + GFF3415 0.77 -0.2
261,311 + GFF3415 0.77 +1.0
261,311 + GFF3415 0.77 -0.7
261,312 - GFF3415 0.77 +0.4
261,371 + GFF3415 0.82 -0.8

Or see this region's nucleotide sequence