Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3374 and GFF3375 are separated by 52 nucleotides GFF3375 and GFF3376 are separated by 490 nucleotides
GFF3374 - hypothetical protein, at 217,795 to 218,793
GFF3374
GFF3375 - hypothetical protein, at 218,846 to 219,613
GFF3375
GFF3376 - Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB, at 220,104 to 220,784
GFF3376
Position (kb) 218
219
220 Strain fitness (log2 ratio) -1
0
1
2 at 217.935 kb on - strand, within GFF3374 at 217.935 kb on - strand, within GFF3374 at 217.935 kb on - strand, within GFF3374 at 217.979 kb on + strand, within GFF3374 at 217.980 kb on - strand, within GFF3374 at 218.009 kb on + strand, within GFF3374 at 218.009 kb on + strand, within GFF3374 at 218.010 kb on - strand, within GFF3374 at 218.010 kb on - strand, within GFF3374 at 218.117 kb on + strand, within GFF3374 at 218.118 kb on - strand, within GFF3374 at 218.118 kb on - strand, within GFF3374 at 218.118 kb on - strand, within GFF3374 at 218.129 kb on + strand, within GFF3374 at 218.129 kb on + strand, within GFF3374 at 218.130 kb on - strand, within GFF3374 at 218.281 kb on + strand, within GFF3374 at 218.282 kb on - strand, within GFF3374 at 218.321 kb on + strand, within GFF3374 at 218.652 kb on - strand, within GFF3374 at 218.652 kb on - strand, within GFF3374 at 218.654 kb on + strand, within GFF3374 at 218.655 kb on - strand, within GFF3374 at 218.941 kb on - strand, within GFF3375 at 218.941 kb on - strand, within GFF3375 at 219.093 kb on + strand, within GFF3375 at 219.093 kb on + strand, within GFF3375 at 219.094 kb on - strand, within GFF3375 at 219.094 kb on - strand, within GFF3375 at 219.094 kb on - strand, within GFF3375 at 219.337 kb on - strand, within GFF3375 at 219.339 kb on - strand, within GFF3375 at 219.339 kb on - strand, within GFF3375 at 219.426 kb on + strand, within GFF3375 at 219.468 kb on - strand, within GFF3375 at 219.538 kb on - strand at 219.538 kb on - strand at 219.542 kb on + strand at 219.542 kb on + strand at 219.542 kb on + strand at 219.543 kb on - strand at 219.543 kb on - strand at 219.543 kb on - strand at 219.543 kb on - strand at 219.812 kb on + strand at 219.813 kb on - strand at 219.847 kb on - strand at 220.128 kb on + strand at 220.129 kb on - strand at 220.219 kb on - strand, within GFF3376 at 220.219 kb on - strand, within GFF3376 at 220.219 kb on - strand, within GFF3376 at 220.237 kb on - strand, within GFF3376 at 220.308 kb on + strand, within GFF3376 at 220.308 kb on + strand, within GFF3376 at 220.309 kb on - strand, within GFF3376 at 220.309 kb on - strand, within GFF3376 at 220.524 kb on + strand, within GFF3376 at 220.525 kb on - strand, within GFF3376
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 217,935 - GFF3374 0.14 -1.1 217,935 - GFF3374 0.14 +0.2 217,935 - GFF3374 0.14 -0.8 217,979 + GFF3374 0.18 +0.5 217,980 - GFF3374 0.19 -0.3 218,009 + GFF3374 0.21 +0.0 218,009 + GFF3374 0.21 -0.1 218,010 - GFF3374 0.22 -0.3 218,010 - GFF3374 0.22 -0.3 218,117 + GFF3374 0.32 +0.8 218,118 - GFF3374 0.32 +0.3 218,118 - GFF3374 0.32 -1.0 218,118 - GFF3374 0.32 +0.0 218,129 + GFF3374 0.33 +0.5 218,129 + GFF3374 0.33 -0.3 218,130 - GFF3374 0.34 -1.0 218,281 + GFF3374 0.49 -1.1 218,282 - GFF3374 0.49 -0.4 218,321 + GFF3374 0.53 -0.3 218,652 - GFF3374 0.86 -0.5 218,652 - GFF3374 0.86 +0.6 218,654 + GFF3374 0.86 +0.2 218,655 - GFF3374 0.86 +2.3 218,941 - GFF3375 0.12 -0.1 218,941 - GFF3375 0.12 +0.4 219,093 + GFF3375 0.32 -1.2 219,093 + GFF3375 0.32 +0.4 219,094 - GFF3375 0.32 +0.8 219,094 - GFF3375 0.32 +1.1 219,094 - GFF3375 0.32 +0.2 219,337 - GFF3375 0.64 +0.7 219,339 - GFF3375 0.64 -0.1 219,339 - GFF3375 0.64 -0.1 219,426 + GFF3375 0.76 -0.2 219,468 - GFF3375 0.81 +0.1 219,538 - +0.2 219,538 - -0.6 219,542 + -0.7 219,542 + -0.7 219,542 + +1.2 219,543 - +0.9 219,543 - -0.2 219,543 - +0.9 219,543 - +0.1 219,812 + +0.4 219,813 - -1.3 219,847 - -0.4 220,128 + -0.2 220,129 - -1.4 220,219 - GFF3376 0.17 +1.0 220,219 - GFF3376 0.17 +0.2 220,219 - GFF3376 0.17 -0.1 220,237 - GFF3376 0.20 -0.4 220,308 + GFF3376 0.30 -0.8 220,308 + GFF3376 0.30 +1.8 220,309 - GFF3376 0.30 +0.9 220,309 - GFF3376 0.30 -0.5 220,524 + GFF3376 0.62 -0.3 220,525 - GFF3376 0.62 +0.3
Or see this region's nucleotide sequence