Strain Fitness in Xanthobacter sp. DMC5 around GFF3362

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3361 and GFF3362 are separated by 108 nucleotidesGFF3362 and GFF3363 are separated by 85 nucleotides GFF3361 - Acetophenone carboxylase gamma subunit, at 205,974 to 207,191 GFF3361 GFF3362 - Acetophenone carboxylase gamma subunit, at 207,300 to 208,040 GFF3362 GFF3363 - HTH-type transcriptional regulator DmlR, at 208,126 to 209,043 GFF3363 Position (kb) 207 208 209Strain fitness (log2 ratio) -2 -1 0 1 2at 206.323 kb on + strand, within GFF3361at 206.544 kb on + strand, within GFF3361at 206.545 kb on - strand, within GFF3361at 206.545 kb on - strand, within GFF3361at 206.701 kb on + strand, within GFF3361at 206.702 kb on - strand, within GFF3361at 207.074 kb on + strandat 207.124 kb on + strandat 207.124 kb on + strandat 207.124 kb on + strandat 207.125 kb on - strandat 207.125 kb on - strandat 207.127 kb on + strandat 207.127 kb on + strandat 207.127 kb on + strandat 207.127 kb on + strandat 207.127 kb on + strandat 207.128 kb on - strandat 207.128 kb on - strandat 207.128 kb on - strandat 207.128 kb on - strandat 207.128 kb on - strandat 207.232 kb on + strandat 207.284 kb on + strandat 207.301 kb on + strandat 207.340 kb on + strandat 207.340 kb on + strandat 207.340 kb on + strandat 207.340 kb on + strandat 207.340 kb on + strandat 207.340 kb on + strandat 207.341 kb on - strandat 207.341 kb on - strandat 207.341 kb on - strandat 207.341 kb on - strandat 207.395 kb on - strand, within GFF3362at 207.404 kb on + strand, within GFF3362at 207.418 kb on + strand, within GFF3362at 207.418 kb on + strand, within GFF3362at 207.419 kb on - strand, within GFF3362at 207.556 kb on + strand, within GFF3362at 207.564 kb on + strand, within GFF3362at 207.565 kb on - strand, within GFF3362at 207.565 kb on - strand, within GFF3362at 207.589 kb on - strand, within GFF3362at 208.016 kb on + strandat 208.017 kb on - strandat 208.017 kb on - strandat 208.034 kb on - strandat 208.066 kb on + strandat 208.066 kb on + strandat 208.067 kb on - strandat 208.067 kb on - strandat 208.122 kb on + strandat 208.122 kb on + strandat 208.123 kb on - strandat 208.172 kb on + strandat 208.173 kb on - strandat 208.217 kb on + strandat 208.218 kb on - strand, within GFF3363at 208.218 kb on - strand, within GFF3363at 208.218 kb on - strand, within GFF3363at 208.218 kb on - strand, within GFF3363at 208.352 kb on - strand, within GFF3363at 208.376 kb on + strand, within GFF3363at 208.533 kb on - strand, within GFF3363at 208.562 kb on + strand, within GFF3363at 208.563 kb on - strand, within GFF3363at 208.628 kb on + strand, within GFF3363at 208.629 kb on - strand, within GFF3363at 208.691 kb on + strand, within GFF3363at 208.727 kb on + strand, within GFF3363at 208.727 kb on + strand, within GFF3363at 208.727 kb on + strand, within GFF3363at 208.728 kb on - strand, within GFF3363at 208.728 kb on - strand, within GFF3363at 208.728 kb on - strand, within GFF3363at 208.741 kb on - strand, within GFF3363at 208.741 kb on - strand, within GFF3363at 208.741 kb on - strand, within GFF3363at 208.741 kb on - strand, within GFF3363at 208.741 kb on - strand, within GFF3363at 208.741 kb on - strand, within GFF3363at 208.741 kb on - strand, within GFF3363at 208.742 kb on + strand, within GFF3363at 208.742 kb on + strand, within GFF3363at 208.742 kb on + strand, within GFF3363at 208.743 kb on - strand, within GFF3363at 208.817 kb on + strand, within GFF3363at 208.818 kb on - strand, within GFF3363

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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206,323 + GFF3361 0.29 +0.6
206,544 + GFF3361 0.47 +0.4
206,545 - GFF3361 0.47 -1.3
206,545 - GFF3361 0.47 +0.5
206,701 + GFF3361 0.60 -0.0
206,702 - GFF3361 0.60 -1.1
207,074 + +0.3
207,124 + -0.3
207,124 + +0.3
207,124 + -0.1
207,125 - -1.0
207,125 - +0.1
207,127 + -0.8
207,127 + -0.3
207,127 + +1.1
207,127 + +0.0
207,127 + -1.2
207,128 - +0.9
207,128 - -0.3
207,128 - +0.1
207,128 - -0.5
207,128 - -0.4
207,232 + -0.5
207,284 + +1.2
207,301 + -0.4
207,340 + -0.7
207,340 + +0.1
207,340 + -0.2
207,340 + -0.7
207,340 + +0.4
207,340 + +1.5
207,341 - +1.2
207,341 - -1.2
207,341 - -0.4
207,341 - +1.1
207,395 - GFF3362 0.13 +1.1
207,404 + GFF3362 0.14 -0.3
207,418 + GFF3362 0.16 +0.7
207,418 + GFF3362 0.16 -1.2
207,419 - GFF3362 0.16 -0.8
207,556 + GFF3362 0.35 +1.2
207,564 + GFF3362 0.36 +0.7
207,565 - GFF3362 0.36 +1.2
207,565 - GFF3362 0.36 -0.8
207,589 - GFF3362 0.39 -0.7
208,016 + +1.1
208,017 - -0.2
208,017 - +0.2
208,034 - -0.2
208,066 + +0.4
208,066 + -1.4
208,067 - -0.2
208,067 - +0.3
208,122 + -0.5
208,122 + -0.8
208,123 - +0.5
208,172 + +0.0
208,173 - +0.3
208,217 + -2.1
208,218 - GFF3363 0.10 +0.8
208,218 - GFF3363 0.10 -0.0
208,218 - GFF3363 0.10 -0.5
208,218 - GFF3363 0.10 -0.7
208,352 - GFF3363 0.25 -1.1
208,376 + GFF3363 0.27 +1.5
208,533 - GFF3363 0.44 -0.2
208,562 + GFF3363 0.47 -0.5
208,563 - GFF3363 0.48 -0.6
208,628 + GFF3363 0.55 -0.2
208,629 - GFF3363 0.55 -1.2
208,691 + GFF3363 0.62 +0.7
208,727 + GFF3363 0.65 -0.4
208,727 + GFF3363 0.65 -0.2
208,727 + GFF3363 0.65 -0.2
208,728 - GFF3363 0.66 +0.5
208,728 - GFF3363 0.66 +0.2
208,728 - GFF3363 0.66 -0.0
208,741 - GFF3363 0.67 +0.2
208,741 - GFF3363 0.67 +1.2
208,741 - GFF3363 0.67 +0.6
208,741 - GFF3363 0.67 +0.8
208,741 - GFF3363 0.67 -1.1
208,741 - GFF3363 0.67 +0.2
208,741 - GFF3363 0.67 +0.2
208,742 + GFF3363 0.67 +1.9
208,742 + GFF3363 0.67 -0.1
208,742 + GFF3363 0.67 +0.0
208,743 - GFF3363 0.67 -0.4
208,817 + GFF3363 0.75 +0.0
208,818 - GFF3363 0.75 -0.1

Or see this region's nucleotide sequence