Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3351 and GFF3352 are separated by 10 nucleotides GFF3352 and GFF3353 overlap by 1 nucleotides GFF3353 and GFF3354 overlap by 4 nucleotides
GFF3351 - High-affinity branched-chain amino acid transport system permease protein LivH, at 195,192 to 196,055
GFF3351
GFF3352 - hypothetical protein, at 196,066 to 196,986
GFF3352
GFF3353 - hypothetical protein, at 196,986 to 197,567
GFF3353
GFF3354 - hypothetical protein, at 197,564 to 198,790
GFF3354
Position (kb) 196
197
198 Strain fitness (log2 ratio) -2
-1
0
1
2 at 196.075 kb on + strand at 196.075 kb on + strand at 196.075 kb on + strand at 196.075 kb on + strand at 196.076 kb on - strand at 196.076 kb on - strand at 196.076 kb on - strand at 196.199 kb on - strand, within GFF3352 at 196.318 kb on + strand, within GFF3352 at 196.681 kb on + strand, within GFF3352 at 196.681 kb on + strand, within GFF3352 at 196.681 kb on + strand, within GFF3352 at 196.681 kb on + strand, within GFF3352 at 196.681 kb on + strand, within GFF3352 at 196.682 kb on - strand, within GFF3352 at 196.682 kb on - strand, within GFF3352 at 196.682 kb on - strand, within GFF3352 at 196.683 kb on + strand, within GFF3352 at 196.684 kb on - strand, within GFF3352 at 196.721 kb on - strand, within GFF3352 at 196.721 kb on - strand, within GFF3352 at 196.721 kb on - strand, within GFF3352 at 196.721 kb on - strand, within GFF3352 at 196.721 kb on - strand, within GFF3352 at 196.727 kb on - strand, within GFF3352 at 196.901 kb on + strand at 196.901 kb on + strand at 196.901 kb on + strand at 196.902 kb on - strand at 197.031 kb on + strand at 197.031 kb on + strand at 197.032 kb on - strand at 197.127 kb on + strand, within GFF3353 at 197.176 kb on - strand, within GFF3353 at 197.223 kb on + strand, within GFF3353 at 197.224 kb on - strand, within GFF3353 at 197.715 kb on - strand, within GFF3354 at 198.188 kb on + strand, within GFF3354 at 198.188 kb on + strand, within GFF3354 at 198.188 kb on + strand, within GFF3354 at 198.305 kb on + strand, within GFF3354 at 198.407 kb on + strand, within GFF3354 at 198.407 kb on + strand, within GFF3354 at 198.407 kb on + strand, within GFF3354 at 198.407 kb on + strand, within GFF3354 at 198.407 kb on + strand, within GFF3354 at 198.408 kb on - strand, within GFF3354 at 198.408 kb on - strand, within GFF3354 at 198.408 kb on - strand, within GFF3354 at 198.408 kb on - strand, within GFF3354 at 198.447 kb on - strand, within GFF3354 at 198.447 kb on - strand, within GFF3354
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 196,075 + +0.0 196,075 + +0.5 196,075 + +0.5 196,075 + -0.7 196,076 - +1.0 196,076 - -0.1 196,076 - +1.0 196,199 - GFF3352 0.14 -0.1 196,318 + GFF3352 0.27 -0.5 196,681 + GFF3352 0.67 -1.5 196,681 + GFF3352 0.67 -0.0 196,681 + GFF3352 0.67 -0.4 196,681 + GFF3352 0.67 +0.3 196,681 + GFF3352 0.67 -0.7 196,682 - GFF3352 0.67 -0.1 196,682 - GFF3352 0.67 +1.0 196,682 - GFF3352 0.67 +0.3 196,683 + GFF3352 0.67 -0.3 196,684 - GFF3352 0.67 -0.0 196,721 - GFF3352 0.71 +0.3 196,721 - GFF3352 0.71 -1.2 196,721 - GFF3352 0.71 -1.4 196,721 - GFF3352 0.71 -0.4 196,721 - GFF3352 0.71 -1.2 196,727 - GFF3352 0.72 +0.4 196,901 + -0.3 196,901 + +1.3 196,901 + +1.6 196,902 - -0.8 197,031 + -0.5 197,031 + +0.2 197,032 - -0.3 197,127 + GFF3353 0.24 -1.1 197,176 - GFF3353 0.33 +0.8 197,223 + GFF3353 0.41 -1.8 197,224 - GFF3353 0.41 -0.6 197,715 - GFF3354 0.12 +1.6 198,188 + GFF3354 0.51 -0.6 198,188 + GFF3354 0.51 +0.0 198,188 + GFF3354 0.51 +0.0 198,305 + GFF3354 0.60 +0.1 198,407 + GFF3354 0.69 -0.5 198,407 + GFF3354 0.69 +0.9 198,407 + GFF3354 0.69 +1.1 198,407 + GFF3354 0.69 -0.6 198,407 + GFF3354 0.69 -0.1 198,408 - GFF3354 0.69 +1.9 198,408 - GFF3354 0.69 +0.3 198,408 - GFF3354 0.69 -0.3 198,408 - GFF3354 0.69 -0.3 198,447 - GFF3354 0.72 +0.4 198,447 - GFF3354 0.72 +0.2
Or see this region's nucleotide sequence