Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3304 and GFF3305 overlap by 11 nucleotides GFF3305 and GFF3306 are separated by 3 nucleotides GFF3306 and GFF3307 are separated by 71 nucleotides
GFF3304 - Glycerate dehydrogenase, at 142,224 to 143,192
GFF3304
GFF3305 - Ureidoglycolate lyase, at 143,182 to 144,084
GFF3305
GFF3306 - D-galactarolactone cycloisomerase, at 144,088 to 145,230
GFF3306
GFF3307 - hypothetical protein, at 145,302 to 146,303
GFF3307
Position (kb) 144
145
146 Strain fitness (log2 ratio) -2
-1
0
1
2 at 143.093 kb on + strand, within GFF3304 at 143.094 kb on - strand, within GFF3304 at 143.485 kb on + strand, within GFF3305 at 143.485 kb on + strand, within GFF3305 at 143.589 kb on - strand, within GFF3305 at 143.589 kb on - strand, within GFF3305 at 143.600 kb on + strand, within GFF3305 at 143.600 kb on + strand, within GFF3305 at 143.600 kb on + strand, within GFF3305 at 143.601 kb on - strand, within GFF3305 at 143.601 kb on - strand, within GFF3305 at 143.669 kb on + strand, within GFF3305 at 143.669 kb on + strand, within GFF3305 at 143.669 kb on + strand, within GFF3305 at 143.669 kb on + strand, within GFF3305 at 143.669 kb on + strand, within GFF3305 at 143.669 kb on + strand, within GFF3305 at 143.670 kb on - strand, within GFF3305 at 143.670 kb on - strand, within GFF3305 at 143.816 kb on + strand, within GFF3305 at 143.817 kb on - strand, within GFF3305 at 143.817 kb on - strand, within GFF3305 at 143.835 kb on - strand, within GFF3305 at 143.835 kb on - strand, within GFF3305 at 144.528 kb on - strand, within GFF3306 at 144.654 kb on + strand, within GFF3306 at 144.686 kb on - strand, within GFF3306 at 144.695 kb on + strand, within GFF3306 at 144.695 kb on + strand, within GFF3306 at 144.695 kb on + strand, within GFF3306 at 144.695 kb on + strand, within GFF3306 at 144.696 kb on - strand, within GFF3306 at 144.758 kb on + strand, within GFF3306 at 144.812 kb on + strand, within GFF3306 at 144.827 kb on + strand, within GFF3306 at 144.898 kb on - strand, within GFF3306 at 144.977 kb on + strand, within GFF3306 at 144.978 kb on - strand, within GFF3306 at 145.079 kb on + strand, within GFF3306 at 145.148 kb on + strand at 145.148 kb on + strand at 145.516 kb on + strand, within GFF3307 at 145.516 kb on + strand, within GFF3307 at 145.517 kb on - strand, within GFF3307 at 145.555 kb on + strand, within GFF3307 at 145.674 kb on + strand, within GFF3307 at 145.675 kb on - strand, within GFF3307 at 145.747 kb on + strand, within GFF3307 at 145.747 kb on + strand, within GFF3307 at 145.801 kb on + strand, within GFF3307 at 145.801 kb on + strand, within GFF3307 at 145.802 kb on - strand, within GFF3307 at 145.802 kb on - strand, within GFF3307 at 146.011 kb on + strand, within GFF3307 at 146.011 kb on + strand, within GFF3307 at 146.011 kb on + strand, within GFF3307
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 143,093 + GFF3304 0.90 -0.6 143,094 - GFF3304 0.90 +0.2 143,485 + GFF3305 0.34 +0.5 143,485 + GFF3305 0.34 +0.1 143,589 - GFF3305 0.45 -0.6 143,589 - GFF3305 0.45 -0.0 143,600 + GFF3305 0.46 +1.2 143,600 + GFF3305 0.46 +1.0 143,600 + GFF3305 0.46 -0.7 143,601 - GFF3305 0.46 +0.8 143,601 - GFF3305 0.46 -0.0 143,669 + GFF3305 0.54 -0.8 143,669 + GFF3305 0.54 -0.0 143,669 + GFF3305 0.54 -0.5 143,669 + GFF3305 0.54 -0.1 143,669 + GFF3305 0.54 +0.5 143,669 + GFF3305 0.54 -0.4 143,670 - GFF3305 0.54 -0.8 143,670 - GFF3305 0.54 +0.4 143,816 + GFF3305 0.70 +1.7 143,817 - GFF3305 0.70 +1.3 143,817 - GFF3305 0.70 +0.2 143,835 - GFF3305 0.72 -0.7 143,835 - GFF3305 0.72 -1.8 144,528 - GFF3306 0.38 +0.3 144,654 + GFF3306 0.50 +0.6 144,686 - GFF3306 0.52 +0.2 144,695 + GFF3306 0.53 +0.4 144,695 + GFF3306 0.53 +0.4 144,695 + GFF3306 0.53 +0.1 144,695 + GFF3306 0.53 +0.3 144,696 - GFF3306 0.53 +0.5 144,758 + GFF3306 0.59 -0.5 144,812 + GFF3306 0.63 -0.1 144,827 + GFF3306 0.65 +0.4 144,898 - GFF3306 0.71 +0.2 144,977 + GFF3306 0.78 -0.4 144,978 - GFF3306 0.78 +1.9 145,079 + GFF3306 0.87 -0.3 145,148 + +0.6 145,148 + -0.7 145,516 + GFF3307 0.21 -0.6 145,516 + GFF3307 0.21 +0.2 145,517 - GFF3307 0.21 -0.2 145,555 + GFF3307 0.25 +0.2 145,674 + GFF3307 0.37 -0.8 145,675 - GFF3307 0.37 -1.7 145,747 + GFF3307 0.44 -1.5 145,747 + GFF3307 0.44 -0.4 145,801 + GFF3307 0.50 +1.0 145,801 + GFF3307 0.50 -0.1 145,802 - GFF3307 0.50 +0.6 145,802 - GFF3307 0.50 +0.5 146,011 + GFF3307 0.71 +0.1 146,011 + GFF3307 0.71 -0.5 146,011 + GFF3307 0.71 -1.1
Or see this region's nucleotide sequence