Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF325 and GFF326 overlap by 1 nucleotides GFF326 and GFF327 overlap by 4 nucleotides GFF327 and GFF328 overlap by 1 nucleotides GFF328 and GFF329 overlap by 4 nucleotides GFF329 and GFF330 are separated by 1 nucleotides GFF330 and GFF331 overlap by 1 nucleotides
GFF325 - hypothetical protein, at 332,987 to 333,475
GFF325
GFF326 - hypothetical protein, at 333,475 to 333,882
GFF326
GFF327 - hypothetical protein, at 333,879 to 334,199
GFF327
GFF328 - hypothetical protein, at 334,199 to 336,577
GFF328
GFF329 - hypothetical protein, at 336,574 to 336,954
GFF329
GFF330 - hypothetical protein, at 336,956 to 337,489
GFF330
GFF331 - hypothetical protein, at 337,489 to 337,911
GFF331
Position (kb) 334
335
336
337 Strain fitness (log2 ratio) -2
-1
0
1
2 at 333.233 kb on + strand, within GFF325 at 333.234 kb on - strand, within GFF325 at 333.287 kb on + strand, within GFF325 at 333.287 kb on + strand, within GFF325 at 333.288 kb on - strand, within GFF325 at 333.288 kb on - strand, within GFF325 at 333.288 kb on - strand, within GFF325 at 333.288 kb on - strand, within GFF325 at 333.288 kb on - strand, within GFF325 at 334.123 kb on - strand, within GFF327 at 334.349 kb on + strand at 334.349 kb on + strand at 334.350 kb on - strand at 334.350 kb on - strand at 334.350 kb on - strand at 334.665 kb on - strand, within GFF328 at 335.000 kb on + strand, within GFF328 at 335.000 kb on + strand, within GFF328 at 335.001 kb on - strand, within GFF328 at 335.001 kb on - strand, within GFF328 at 335.001 kb on - strand, within GFF328 at 335.125 kb on + strand, within GFF328 at 335.126 kb on - strand, within GFF328 at 335.126 kb on - strand, within GFF328 at 335.143 kb on + strand, within GFF328 at 335.143 kb on + strand, within GFF328 at 335.143 kb on + strand, within GFF328 at 335.144 kb on - strand, within GFF328 at 335.144 kb on - strand, within GFF328 at 335.144 kb on - strand, within GFF328 at 335.144 kb on - strand, within GFF328 at 335.144 kb on - strand, within GFF328 at 335.260 kb on + strand, within GFF328 at 335.261 kb on - strand, within GFF328 at 335.261 kb on - strand, within GFF328 at 335.262 kb on + strand, within GFF328 at 335.263 kb on - strand, within GFF328 at 335.459 kb on + strand, within GFF328 at 335.459 kb on + strand, within GFF328 at 335.459 kb on + strand, within GFF328 at 335.460 kb on - strand, within GFF328 at 335.510 kb on + strand, within GFF328 at 335.510 kb on + strand, within GFF328 at 335.510 kb on + strand, within GFF328 at 335.511 kb on - strand, within GFF328 at 335.568 kb on - strand, within GFF328 at 335.568 kb on - strand, within GFF328 at 335.672 kb on + strand, within GFF328 at 335.772 kb on - strand, within GFF328 at 335.772 kb on - strand, within GFF328 at 335.772 kb on - strand, within GFF328 at 335.772 kb on - strand, within GFF328 at 335.772 kb on - strand, within GFF328 at 335.868 kb on - strand, within GFF328 at 336.200 kb on + strand, within GFF328 at 336.200 kb on + strand, within GFF328 at 336.200 kb on + strand, within GFF328 at 336.463 kb on + strand at 336.607 kb on + strand at 336.607 kb on + strand at 336.608 kb on - strand at 336.608 kb on - strand at 337.237 kb on + strand, within GFF330 at 337.262 kb on + strand, within GFF330 at 337.283 kb on + strand, within GFF330 at 337.317 kb on - strand, within GFF330 at 337.519 kb on + strand at 337.533 kb on + strand, within GFF331 at 337.534 kb on - strand, within GFF331
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 333,233 + GFF325 0.50 -0.1 333,234 - GFF325 0.51 +1.3 333,287 + GFF325 0.61 -0.7 333,287 + GFF325 0.61 -0.0 333,288 - GFF325 0.62 +0.3 333,288 - GFF325 0.62 -1.8 333,288 - GFF325 0.62 -1.2 333,288 - GFF325 0.62 -1.9 333,288 - GFF325 0.62 +0.9 334,123 - GFF327 0.76 -0.3 334,349 + +0.9 334,349 + -1.0 334,350 - -0.0 334,350 - +1.3 334,350 - +0.7 334,665 - GFF328 0.20 +0.3 335,000 + GFF328 0.34 +0.7 335,000 + GFF328 0.34 -0.5 335,001 - GFF328 0.34 +1.6 335,001 - GFF328 0.34 -0.7 335,001 - GFF328 0.34 -0.8 335,125 + GFF328 0.39 -2.2 335,126 - GFF328 0.39 +1.5 335,126 - GFF328 0.39 +1.1 335,143 + GFF328 0.40 +0.1 335,143 + GFF328 0.40 +0.2 335,143 + GFF328 0.40 -0.2 335,144 - GFF328 0.40 +1.6 335,144 - GFF328 0.40 +0.5 335,144 - GFF328 0.40 -0.0 335,144 - GFF328 0.40 +1.8 335,144 - GFF328 0.40 -0.9 335,260 + GFF328 0.45 +0.6 335,261 - GFF328 0.45 +1.4 335,261 - GFF328 0.45 +1.0 335,262 + GFF328 0.45 +1.0 335,263 - GFF328 0.45 +0.5 335,459 + GFF328 0.53 -0.2 335,459 + GFF328 0.53 +0.9 335,459 + GFF328 0.53 +0.4 335,460 - GFF328 0.53 +1.1 335,510 + GFF328 0.55 -0.6 335,510 + GFF328 0.55 +0.1 335,510 + GFF328 0.55 -0.6 335,511 - GFF328 0.55 +1.4 335,568 - GFF328 0.58 +0.3 335,568 - GFF328 0.58 -1.3 335,672 + GFF328 0.62 +0.7 335,772 - GFF328 0.66 +0.2 335,772 - GFF328 0.66 +0.8 335,772 - GFF328 0.66 -0.0 335,772 - GFF328 0.66 +1.4 335,772 - GFF328 0.66 +0.7 335,868 - GFF328 0.70 +1.1 336,200 + GFF328 0.84 -0.0 336,200 + GFF328 0.84 -0.9 336,200 + GFF328 0.84 +0.8 336,463 + +0.5 336,607 + +1.3 336,607 + -0.7 336,608 - -0.2 336,608 - -0.0 337,237 + GFF330 0.53 -1.0 337,262 + GFF330 0.57 +1.2 337,283 + GFF330 0.61 +0.0 337,317 - GFF330 0.68 +0.2 337,519 + +0.1 337,533 + GFF331 0.10 -0.6 337,534 - GFF331 0.11 -0.4
Or see this region's nucleotide sequence