Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3236 and GFF3237 are separated by 112 nucleotides GFF3237 and GFF3238 are separated by 251 nucleotides
GFF3236 - Oxalate:formate antiporter, at 62,724 to 64,019
GFF3236
GFF3237 - Formyl-CoA:oxalate CoA-transferase, at 64,132 to 65,361
GFF3237
GFF3238 - hypothetical protein, at 65,613 to 66,083
GFF3238
Position (kb) 64
65
66 Strain fitness (log2 ratio) -2
-1
0
1 at 63.149 kb on + strand, within GFF3236 at 63.149 kb on + strand, within GFF3236 at 63.244 kb on + strand, within GFF3236 at 63.245 kb on - strand, within GFF3236 at 63.245 kb on - strand, within GFF3236 at 63.356 kb on - strand, within GFF3236 at 63.356 kb on - strand, within GFF3236 at 63.356 kb on - strand, within GFF3236 at 63.391 kb on + strand, within GFF3236 at 63.392 kb on - strand, within GFF3236 at 63.392 kb on - strand, within GFF3236 at 63.659 kb on - strand, within GFF3236 at 63.700 kb on + strand, within GFF3236 at 63.700 kb on + strand, within GFF3236 at 63.701 kb on - strand, within GFF3236 at 63.724 kb on + strand, within GFF3236 at 63.791 kb on - strand, within GFF3236 at 63.805 kb on + strand, within GFF3236 at 63.805 kb on + strand, within GFF3236 at 64.021 kb on - strand at 64.206 kb on + strand at 64.207 kb on - strand at 64.207 kb on - strand at 64.207 kb on - strand at 64.283 kb on + strand, within GFF3237 at 64.283 kb on + strand, within GFF3237 at 64.283 kb on + strand, within GFF3237 at 64.284 kb on - strand, within GFF3237 at 64.284 kb on - strand, within GFF3237 at 64.284 kb on - strand, within GFF3237 at 64.332 kb on - strand, within GFF3237 at 64.577 kb on + strand, within GFF3237 at 64.577 kb on + strand, within GFF3237 at 64.578 kb on - strand, within GFF3237 at 64.578 kb on - strand, within GFF3237 at 64.584 kb on - strand, within GFF3237 at 64.857 kb on + strand, within GFF3237 at 64.949 kb on + strand, within GFF3237 at 64.949 kb on + strand, within GFF3237 at 64.949 kb on + strand, within GFF3237 at 64.950 kb on - strand, within GFF3237 at 64.950 kb on - strand, within GFF3237 at 65.000 kb on + strand, within GFF3237 at 65.000 kb on + strand, within GFF3237 at 65.000 kb on + strand, within GFF3237 at 65.000 kb on + strand, within GFF3237 at 65.000 kb on + strand, within GFF3237 at 65.001 kb on - strand, within GFF3237 at 65.001 kb on - strand, within GFF3237 at 65.001 kb on - strand, within GFF3237 at 65.144 kb on + strand, within GFF3237 at 65.151 kb on + strand, within GFF3237 at 65.186 kb on + strand, within GFF3237 at 65.187 kb on - strand, within GFF3237 at 65.435 kb on + strand at 65.435 kb on + strand at 65.436 kb on - strand at 65.436 kb on - strand at 65.545 kb on + strand at 65.687 kb on + strand, within GFF3238 at 65.692 kb on + strand, within GFF3238 at 65.693 kb on - strand, within GFF3238 at 65.693 kb on - strand, within GFF3238 at 65.737 kb on + strand, within GFF3238 at 65.737 kb on + strand, within GFF3238 at 65.857 kb on - strand, within GFF3238 at 65.857 kb on - strand, within GFF3238 at 66.196 kb on + strand at 66.317 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 63,149 + GFF3236 0.33 +1.0 63,149 + GFF3236 0.33 +1.3 63,244 + GFF3236 0.40 +1.3 63,245 - GFF3236 0.40 -0.1 63,245 - GFF3236 0.40 +1.5 63,356 - GFF3236 0.49 +0.6 63,356 - GFF3236 0.49 +1.2 63,356 - GFF3236 0.49 -0.3 63,391 + GFF3236 0.51 +1.3 63,392 - GFF3236 0.52 +0.2 63,392 - GFF3236 0.52 -0.7 63,659 - GFF3236 0.72 -1.1 63,700 + GFF3236 0.75 +0.4 63,700 + GFF3236 0.75 -0.5 63,701 - GFF3236 0.75 +0.2 63,724 + GFF3236 0.77 +0.4 63,791 - GFF3236 0.82 -0.4 63,805 + GFF3236 0.83 -0.0 63,805 + GFF3236 0.83 -0.5 64,021 - -1.0 64,206 + +0.7 64,207 - -0.7 64,207 - -0.4 64,207 - +0.6 64,283 + GFF3237 0.12 -1.9 64,283 + GFF3237 0.12 +0.4 64,283 + GFF3237 0.12 -0.4 64,284 - GFF3237 0.12 +0.2 64,284 - GFF3237 0.12 +0.5 64,284 - GFF3237 0.12 +0.4 64,332 - GFF3237 0.16 -1.0 64,577 + GFF3237 0.36 -0.2 64,577 + GFF3237 0.36 -0.1 64,578 - GFF3237 0.36 -0.3 64,578 - GFF3237 0.36 +0.8 64,584 - GFF3237 0.37 +0.2 64,857 + GFF3237 0.59 -0.4 64,949 + GFF3237 0.66 +0.5 64,949 + GFF3237 0.66 -0.1 64,949 + GFF3237 0.66 -0.3 64,950 - GFF3237 0.67 -1.7 64,950 - GFF3237 0.67 +0.6 65,000 + GFF3237 0.71 +0.9 65,000 + GFF3237 0.71 +1.3 65,000 + GFF3237 0.71 -0.8 65,000 + GFF3237 0.71 +0.5 65,000 + GFF3237 0.71 -0.4 65,001 - GFF3237 0.71 -1.3 65,001 - GFF3237 0.71 +1.2 65,001 - GFF3237 0.71 +0.6 65,144 + GFF3237 0.82 +0.7 65,151 + GFF3237 0.83 -0.6 65,186 + GFF3237 0.86 +0.4 65,187 - GFF3237 0.86 +0.2 65,435 + +0.5 65,435 + +0.2 65,436 - -0.7 65,436 - +0.1 65,545 + +1.3 65,687 + GFF3238 0.16 -1.0 65,692 + GFF3238 0.17 +0.7 65,693 - GFF3238 0.17 +0.2 65,693 - GFF3238 0.17 +0.2 65,737 + GFF3238 0.26 +0.3 65,737 + GFF3238 0.26 +0.2 65,857 - GFF3238 0.52 -0.2 65,857 - GFF3238 0.52 -0.3 66,196 + +0.7 66,317 - +1.6
Or see this region's nucleotide sequence