Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3235 and GFF3236 are separated by 656 nucleotides GFF3236 and GFF3237 are separated by 112 nucleotides
GFF3235 - Oxalate:formate antiporter, at 60,760 to 62,067
GFF3235
GFF3236 - Oxalate:formate antiporter, at 62,724 to 64,019
GFF3236
GFF3237 - Formyl-CoA:oxalate CoA-transferase, at 64,132 to 65,361
GFF3237
Position (kb) 62
63
64
65 Strain fitness (log2 ratio) -2
-1
0
1
2 at 61.739 kb on + strand, within GFF3235 at 61.739 kb on + strand, within GFF3235 at 61.740 kb on - strand, within GFF3235 at 61.740 kb on - strand, within GFF3235 at 61.740 kb on - strand, within GFF3235 at 61.741 kb on - strand, within GFF3235 at 61.798 kb on - strand, within GFF3235 at 61.964 kb on + strand at 61.964 kb on + strand at 61.965 kb on - strand at 61.965 kb on - strand at 62.216 kb on + strand at 62.217 kb on - strand at 62.411 kb on + strand at 62.624 kb on + strand at 62.625 kb on - strand at 62.684 kb on + strand at 62.685 kb on - strand at 62.685 kb on - strand at 62.857 kb on + strand, within GFF3236 at 62.857 kb on + strand, within GFF3236 at 62.857 kb on + strand, within GFF3236 at 62.858 kb on - strand, within GFF3236 at 62.858 kb on - strand, within GFF3236 at 62.941 kb on + strand, within GFF3236 at 62.953 kb on + strand, within GFF3236 at 62.953 kb on + strand, within GFF3236 at 63.013 kb on + strand, within GFF3236 at 63.014 kb on - strand, within GFF3236 at 63.105 kb on - strand, within GFF3236 at 63.149 kb on + strand, within GFF3236 at 63.149 kb on + strand, within GFF3236 at 63.244 kb on + strand, within GFF3236 at 63.245 kb on - strand, within GFF3236 at 63.245 kb on - strand, within GFF3236 at 63.356 kb on - strand, within GFF3236 at 63.356 kb on - strand, within GFF3236 at 63.356 kb on - strand, within GFF3236 at 63.391 kb on + strand, within GFF3236 at 63.392 kb on - strand, within GFF3236 at 63.392 kb on - strand, within GFF3236 at 63.659 kb on - strand, within GFF3236 at 63.700 kb on + strand, within GFF3236 at 63.700 kb on + strand, within GFF3236 at 63.701 kb on - strand, within GFF3236 at 63.724 kb on + strand, within GFF3236 at 63.791 kb on - strand, within GFF3236 at 63.805 kb on + strand, within GFF3236 at 63.805 kb on + strand, within GFF3236 at 64.021 kb on - strand at 64.206 kb on + strand at 64.207 kb on - strand at 64.207 kb on - strand at 64.207 kb on - strand at 64.283 kb on + strand, within GFF3237 at 64.283 kb on + strand, within GFF3237 at 64.283 kb on + strand, within GFF3237 at 64.284 kb on - strand, within GFF3237 at 64.284 kb on - strand, within GFF3237 at 64.284 kb on - strand, within GFF3237 at 64.332 kb on - strand, within GFF3237 at 64.577 kb on + strand, within GFF3237 at 64.577 kb on + strand, within GFF3237 at 64.578 kb on - strand, within GFF3237 at 64.578 kb on - strand, within GFF3237 at 64.584 kb on - strand, within GFF3237 at 64.857 kb on + strand, within GFF3237 at 64.949 kb on + strand, within GFF3237 at 64.949 kb on + strand, within GFF3237 at 64.949 kb on + strand, within GFF3237 at 64.950 kb on - strand, within GFF3237 at 64.950 kb on - strand, within GFF3237 at 65.000 kb on + strand, within GFF3237 at 65.000 kb on + strand, within GFF3237 at 65.000 kb on + strand, within GFF3237 at 65.000 kb on + strand, within GFF3237 at 65.000 kb on + strand, within GFF3237 at 65.001 kb on - strand, within GFF3237 at 65.001 kb on - strand, within GFF3237 at 65.001 kb on - strand, within GFF3237
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 61,739 + GFF3235 0.75 +0.4 61,739 + GFF3235 0.75 +0.3 61,740 - GFF3235 0.75 -0.5 61,740 - GFF3235 0.75 -0.0 61,740 - GFF3235 0.75 +0.5 61,741 - GFF3235 0.75 +0.2 61,798 - GFF3235 0.79 +0.4 61,964 + -0.0 61,964 + +0.8 61,965 - -0.4 61,965 - +0.3 62,216 + -0.5 62,217 - +2.3 62,411 + -0.6 62,624 + +0.9 62,625 - +2.3 62,684 + -0.5 62,685 - +1.1 62,685 - +0.1 62,857 + GFF3236 0.10 +0.8 62,857 + GFF3236 0.10 -0.6 62,857 + GFF3236 0.10 -0.2 62,858 - GFF3236 0.10 -0.7 62,858 - GFF3236 0.10 +1.2 62,941 + GFF3236 0.17 +0.2 62,953 + GFF3236 0.18 +0.5 62,953 + GFF3236 0.18 -0.8 63,013 + GFF3236 0.22 +1.2 63,014 - GFF3236 0.22 +0.1 63,105 - GFF3236 0.29 -0.7 63,149 + GFF3236 0.33 +1.0 63,149 + GFF3236 0.33 +1.3 63,244 + GFF3236 0.40 +1.3 63,245 - GFF3236 0.40 -0.1 63,245 - GFF3236 0.40 +1.5 63,356 - GFF3236 0.49 +0.6 63,356 - GFF3236 0.49 +1.2 63,356 - GFF3236 0.49 -0.3 63,391 + GFF3236 0.51 +1.3 63,392 - GFF3236 0.52 +0.2 63,392 - GFF3236 0.52 -0.7 63,659 - GFF3236 0.72 -1.1 63,700 + GFF3236 0.75 +0.4 63,700 + GFF3236 0.75 -0.5 63,701 - GFF3236 0.75 +0.2 63,724 + GFF3236 0.77 +0.4 63,791 - GFF3236 0.82 -0.4 63,805 + GFF3236 0.83 -0.0 63,805 + GFF3236 0.83 -0.5 64,021 - -1.0 64,206 + +0.7 64,207 - -0.7 64,207 - -0.4 64,207 - +0.6 64,283 + GFF3237 0.12 -1.9 64,283 + GFF3237 0.12 +0.4 64,283 + GFF3237 0.12 -0.4 64,284 - GFF3237 0.12 +0.2 64,284 - GFF3237 0.12 +0.5 64,284 - GFF3237 0.12 +0.4 64,332 - GFF3237 0.16 -1.0 64,577 + GFF3237 0.36 -0.2 64,577 + GFF3237 0.36 -0.1 64,578 - GFF3237 0.36 -0.3 64,578 - GFF3237 0.36 +0.8 64,584 - GFF3237 0.37 +0.2 64,857 + GFF3237 0.59 -0.4 64,949 + GFF3237 0.66 +0.5 64,949 + GFF3237 0.66 -0.1 64,949 + GFF3237 0.66 -0.3 64,950 - GFF3237 0.67 -1.7 64,950 - GFF3237 0.67 +0.6 65,000 + GFF3237 0.71 +0.9 65,000 + GFF3237 0.71 +1.3 65,000 + GFF3237 0.71 -0.8 65,000 + GFF3237 0.71 +0.5 65,000 + GFF3237 0.71 -0.4 65,001 - GFF3237 0.71 -1.3 65,001 - GFF3237 0.71 +1.2 65,001 - GFF3237 0.71 +0.6
Or see this region's nucleotide sequence