Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3173 and GFF3174 are separated by 16 nucleotides GFF3174 and GFF3175 are separated by 73 nucleotides GFF3175 and GFF3176 are separated by 92 nucleotides GFF3176 and GFF3177 are separated by 150 nucleotides
GFF3173 - hypothetical protein, at 912,936 to 913,547
GFF3173
GFF3174 - hypothetical protein, at 913,564 to 914,418
GFF3174
GFF3175 - hypothetical protein, at 914,492 to 915,154
GFF3175
GFF3176 - hypothetical protein, at 915,247 to 915,630
GFF3176
GFF3177 - Malate dehydrogenase, at 915,781 to 916,764
GFF3177
Position (kb) 914
915
916 Strain fitness (log2 ratio) -2
-1
0
1
2 at 913.864 kb on + strand, within GFF3174 at 913.864 kb on + strand, within GFF3174 at 913.864 kb on + strand, within GFF3174 at 914.416 kb on + strand at 914.417 kb on - strand at 914.475 kb on + strand at 914.476 kb on - strand at 914.476 kb on - strand at 914.877 kb on - strand, within GFF3175 at 914.877 kb on - strand, within GFF3175 at 915.152 kb on + strand at 915.153 kb on - strand at 915.289 kb on + strand, within GFF3176 at 915.290 kb on - strand, within GFF3176 at 915.290 kb on - strand, within GFF3176 at 915.379 kb on + strand, within GFF3176 at 915.379 kb on + strand, within GFF3176 at 915.379 kb on + strand, within GFF3176 at 915.379 kb on + strand, within GFF3176 at 915.379 kb on + strand, within GFF3176 at 915.380 kb on - strand, within GFF3176 at 915.507 kb on - strand, within GFF3176 at 915.529 kb on + strand, within GFF3176 at 915.529 kb on + strand, within GFF3176 at 915.530 kb on - strand, within GFF3176 at 915.541 kb on + strand, within GFF3176 at 915.541 kb on + strand, within GFF3176 at 915.542 kb on - strand, within GFF3176 at 915.542 kb on - strand, within GFF3176 at 915.542 kb on - strand, within GFF3176 at 915.547 kb on + strand, within GFF3176 at 915.547 kb on + strand, within GFF3176 at 915.548 kb on - strand, within GFF3176 at 915.665 kb on - strand at 915.728 kb on + strand at 915.728 kb on + strand at 915.728 kb on + strand at 915.728 kb on + strand at 915.728 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 913,864 + GFF3174 0.35 -0.1 913,864 + GFF3174 0.35 -0.4 913,864 + GFF3174 0.35 -0.0 914,416 + -0.2 914,417 - +0.7 914,475 + +0.6 914,476 - +0.7 914,476 - +1.2 914,877 - GFF3175 0.58 -1.6 914,877 - GFF3175 0.58 +0.9 915,152 + -0.3 915,153 - -1.8 915,289 + GFF3176 0.11 -1.0 915,290 - GFF3176 0.11 +1.1 915,290 - GFF3176 0.11 +0.4 915,379 + GFF3176 0.34 +0.7 915,379 + GFF3176 0.34 +0.7 915,379 + GFF3176 0.34 -0.9 915,379 + GFF3176 0.34 -0.2 915,379 + GFF3176 0.34 -0.1 915,380 - GFF3176 0.35 -0.9 915,507 - GFF3176 0.68 +0.3 915,529 + GFF3176 0.73 -0.7 915,529 + GFF3176 0.73 -0.0 915,530 - GFF3176 0.74 +0.6 915,541 + GFF3176 0.77 +0.1 915,541 + GFF3176 0.77 +2.6 915,542 - GFF3176 0.77 +1.3 915,542 - GFF3176 0.77 -0.0 915,542 - GFF3176 0.77 -0.2 915,547 + GFF3176 0.78 +0.3 915,547 + GFF3176 0.78 +0.8 915,548 - GFF3176 0.78 +0.2 915,665 - +0.1 915,728 + -0.0 915,728 + +2.5 915,728 + +0.3 915,728 + +0.1 915,728 + +0.8
Or see this region's nucleotide sequence