Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3152 and GFF3153 are separated by 323 nucleotides GFF3153 and GFF3154 are separated by 51 nucleotides GFF3154 and GFF3155 overlap by 4 nucleotides
GFF3152 - hypothetical protein, at 887,695 to 888,465
GFF3152
GFF3153 - hypothetical protein, at 888,789 to 889,295
GFF3153
GFF3154 - hypothetical protein, at 889,347 to 890,252
GFF3154
GFF3155 - putative methylmalonyl-CoA mutase large subunit, at 890,249 to 892,405
GFF3155
Position (kb) 888
889
890 Strain fitness (log2 ratio) -2
-1
0
1
2 at 887.855 kb on + strand, within GFF3152 at 887.856 kb on - strand, within GFF3152 at 887.856 kb on - strand, within GFF3152 at 887.856 kb on - strand, within GFF3152 at 887.856 kb on - strand, within GFF3152 at 888.045 kb on + strand, within GFF3152 at 888.371 kb on + strand, within GFF3152 at 888.372 kb on - strand, within GFF3152 at 888.372 kb on - strand, within GFF3152 at 888.372 kb on - strand, within GFF3152 at 888.372 kb on - strand, within GFF3152 at 888.614 kb on + strand at 888.642 kb on + strand at 888.880 kb on - strand, within GFF3153 at 888.880 kb on - strand, within GFF3153 at 889.086 kb on - strand, within GFF3153 at 889.154 kb on + strand, within GFF3153 at 889.507 kb on + strand, within GFF3154 at 889.507 kb on + strand, within GFF3154 at 889.508 kb on - strand, within GFF3154 at 889.508 kb on - strand, within GFF3154 at 889.508 kb on - strand, within GFF3154 at 889.623 kb on - strand, within GFF3154 at 889.645 kb on + strand, within GFF3154 at 889.660 kb on + strand, within GFF3154 at 889.660 kb on + strand, within GFF3154 at 889.661 kb on - strand, within GFF3154 at 889.661 kb on - strand, within GFF3154 at 890.044 kb on + strand, within GFF3154 at 890.045 kb on - strand, within GFF3154 at 890.045 kb on - strand, within GFF3154 at 890.077 kb on + strand, within GFF3154 at 890.078 kb on - strand, within GFF3154 at 890.078 kb on - strand, within GFF3154 at 890.078 kb on - strand, within GFF3154 at 890.165 kb on - strand at 890.165 kb on - strand at 890.269 kb on + strand at 890.270 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 887,855 + GFF3152 0.21 +0.1 887,856 - GFF3152 0.21 -0.0 887,856 - GFF3152 0.21 -0.0 887,856 - GFF3152 0.21 +0.7 887,856 - GFF3152 0.21 +0.8 888,045 + GFF3152 0.45 -0.3 888,371 + GFF3152 0.88 +0.8 888,372 - GFF3152 0.88 -0.4 888,372 - GFF3152 0.88 -1.8 888,372 - GFF3152 0.88 +0.6 888,372 - GFF3152 0.88 +0.2 888,614 + +0.8 888,642 + +0.3 888,880 - GFF3153 0.18 -1.4 888,880 - GFF3153 0.18 +0.3 889,086 - GFF3153 0.59 -0.4 889,154 + GFF3153 0.72 +0.6 889,507 + GFF3154 0.18 +0.9 889,507 + GFF3154 0.18 +0.9 889,508 - GFF3154 0.18 -0.3 889,508 - GFF3154 0.18 -2.0 889,508 - GFF3154 0.18 +0.1 889,623 - GFF3154 0.30 -0.4 889,645 + GFF3154 0.33 -0.5 889,660 + GFF3154 0.35 -0.0 889,660 + GFF3154 0.35 +0.5 889,661 - GFF3154 0.35 -0.2 889,661 - GFF3154 0.35 -0.1 890,044 + GFF3154 0.77 +0.2 890,045 - GFF3154 0.77 +0.3 890,045 - GFF3154 0.77 +0.6 890,077 + GFF3154 0.81 +0.1 890,078 - GFF3154 0.81 -0.2 890,078 - GFF3154 0.81 -0.5 890,078 - GFF3154 0.81 +0.0 890,165 - +1.9 890,165 - +0.4 890,269 + +0.6 890,270 - -0.4
Or see this region's nucleotide sequence