Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3122 and GFF3123 overlap by 4 nucleotides GFF3123 and GFF3124 are separated by 37 nucleotides GFF3124 and GFF3125 overlap by 4 nucleotides
GFF3122 - hypothetical protein, at 853,180 to 854,043
GFF3122
GFF3123 - hypothetical protein, at 854,040 to 855,047
GFF3123
GFF3124 - hypothetical protein, at 855,085 to 855,696
GFF3124
GFF3125 - hypothetical protein, at 855,693 to 856,322
GFF3125
Position (kb) 854
855
856 Strain fitness (log2 ratio) -2
-1
0
1
2 at 853.118 kb on + strand at 853.119 kb on - strand at 853.200 kb on + strand at 853.200 kb on + strand at 853.201 kb on - strand at 853.383 kb on - strand, within GFF3122 at 853.609 kb on + strand, within GFF3122 at 853.609 kb on + strand, within GFF3122 at 853.630 kb on + strand, within GFF3122 at 853.900 kb on + strand, within GFF3122 at 853.900 kb on + strand, within GFF3122 at 853.900 kb on + strand, within GFF3122 at 853.900 kb on + strand, within GFF3122 at 853.901 kb on - strand, within GFF3122 at 853.901 kb on - strand, within GFF3122 at 853.901 kb on - strand, within GFF3122 at 853.901 kb on - strand, within GFF3122 at 853.901 kb on - strand, within GFF3122 at 853.901 kb on - strand, within GFF3122 at 853.901 kb on - strand, within GFF3122 at 853.902 kb on + strand, within GFF3122 at 853.902 kb on + strand, within GFF3122 at 853.902 kb on + strand, within GFF3122 at 853.902 kb on + strand, within GFF3122 at 853.902 kb on + strand, within GFF3122 at 853.902 kb on + strand, within GFF3122 at 853.903 kb on - strand, within GFF3122 at 853.903 kb on - strand, within GFF3122 at 853.903 kb on - strand, within GFF3122 at 853.903 kb on - strand, within GFF3122 at 854.017 kb on + strand at 854.017 kb on + strand at 854.415 kb on + strand, within GFF3123 at 854.416 kb on - strand, within GFF3123 at 854.502 kb on + strand, within GFF3123 at 854.502 kb on + strand, within GFF3123 at 854.502 kb on + strand, within GFF3123 at 854.503 kb on - strand, within GFF3123 at 854.503 kb on - strand, within GFF3123 at 854.503 kb on - strand, within GFF3123 at 855.000 kb on + strand at 855.000 kb on + strand at 855.001 kb on - strand at 855.001 kb on - strand at 855.064 kb on + strand at 855.064 kb on + strand at 855.064 kb on + strand at 855.065 kb on - strand at 855.065 kb on - strand at 855.165 kb on + strand, within GFF3124 at 855.484 kb on + strand, within GFF3124 at 855.662 kb on - strand at 855.662 kb on - strand at 855.662 kb on - strand at 855.785 kb on + strand, within GFF3125 at 855.804 kb on + strand, within GFF3125 at 855.805 kb on - strand, within GFF3125
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 853,118 + +0.6 853,119 - -0.4 853,200 + +0.4 853,200 + +0.5 853,201 - -0.2 853,383 - GFF3122 0.23 -0.1 853,609 + GFF3122 0.50 +0.3 853,609 + GFF3122 0.50 +2.0 853,630 + GFF3122 0.52 +1.3 853,900 + GFF3122 0.83 +1.1 853,900 + GFF3122 0.83 -0.6 853,900 + GFF3122 0.83 +1.1 853,900 + GFF3122 0.83 +0.3 853,901 - GFF3122 0.83 +0.5 853,901 - GFF3122 0.83 +0.9 853,901 - GFF3122 0.83 +0.4 853,901 - GFF3122 0.83 +0.1 853,901 - GFF3122 0.83 -2.3 853,901 - GFF3122 0.83 -0.0 853,901 - GFF3122 0.83 +0.8 853,902 + GFF3122 0.84 +0.7 853,902 + GFF3122 0.84 -0.4 853,902 + GFF3122 0.84 -0.2 853,902 + GFF3122 0.84 +0.2 853,902 + GFF3122 0.84 +1.1 853,902 + GFF3122 0.84 +0.1 853,903 - GFF3122 0.84 +0.7 853,903 - GFF3122 0.84 +0.4 853,903 - GFF3122 0.84 -0.5 853,903 - GFF3122 0.84 -0.4 854,017 + -0.2 854,017 + -0.4 854,415 + GFF3123 0.37 +0.0 854,416 - GFF3123 0.37 +0.2 854,502 + GFF3123 0.46 +0.8 854,502 + GFF3123 0.46 -1.0 854,502 + GFF3123 0.46 +0.1 854,503 - GFF3123 0.46 -0.3 854,503 - GFF3123 0.46 +1.5 854,503 - GFF3123 0.46 -0.9 855,000 + +1.0 855,000 + +1.2 855,001 - +0.8 855,001 - +0.6 855,064 + -0.6 855,064 + +0.8 855,064 + -1.0 855,065 - +0.6 855,065 - -1.1 855,165 + GFF3124 0.13 -2.6 855,484 + GFF3124 0.65 -0.5 855,662 - +0.1 855,662 - -0.4 855,662 - -1.4 855,785 + GFF3125 0.15 +0.3 855,804 + GFF3125 0.18 -0.3 855,805 - GFF3125 0.18 -0.5
Or see this region's nucleotide sequence