Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3121 and GFF3122 are separated by 263 nucleotides GFF3122 and GFF3123 overlap by 4 nucleotides
GFF3121 - hypothetical protein, at 850,982 to 852,916
GFF3121
GFF3122 - hypothetical protein, at 853,180 to 854,043
GFF3122
GFF3123 - hypothetical protein, at 854,040 to 855,047
GFF3123
Position (kb) 853
854
855 Strain fitness (log2 ratio) -2
-1
0
1
2 at 852.252 kb on + strand, within GFF3121 at 852.253 kb on + strand, within GFF3121 at 852.253 kb on + strand, within GFF3121 at 852.254 kb on - strand, within GFF3121 at 852.474 kb on + strand, within GFF3121 at 852.474 kb on + strand, within GFF3121 at 852.475 kb on - strand, within GFF3121 at 852.475 kb on - strand, within GFF3121 at 852.727 kb on - strand at 852.813 kb on + strand at 852.813 kb on + strand at 852.814 kb on - strand at 852.814 kb on - strand at 852.814 kb on - strand at 852.814 kb on - strand at 852.814 kb on - strand at 852.814 kb on - strand at 852.969 kb on - strand at 852.969 kb on - strand at 853.118 kb on + strand at 853.119 kb on - strand at 853.200 kb on + strand at 853.200 kb on + strand at 853.201 kb on - strand at 853.383 kb on - strand, within GFF3122 at 853.609 kb on + strand, within GFF3122 at 853.609 kb on + strand, within GFF3122 at 853.630 kb on + strand, within GFF3122 at 853.900 kb on + strand, within GFF3122 at 853.900 kb on + strand, within GFF3122 at 853.900 kb on + strand, within GFF3122 at 853.900 kb on + strand, within GFF3122 at 853.901 kb on - strand, within GFF3122 at 853.901 kb on - strand, within GFF3122 at 853.901 kb on - strand, within GFF3122 at 853.901 kb on - strand, within GFF3122 at 853.901 kb on - strand, within GFF3122 at 853.901 kb on - strand, within GFF3122 at 853.901 kb on - strand, within GFF3122 at 853.902 kb on + strand, within GFF3122 at 853.902 kb on + strand, within GFF3122 at 853.902 kb on + strand, within GFF3122 at 853.902 kb on + strand, within GFF3122 at 853.902 kb on + strand, within GFF3122 at 853.902 kb on + strand, within GFF3122 at 853.903 kb on - strand, within GFF3122 at 853.903 kb on - strand, within GFF3122 at 853.903 kb on - strand, within GFF3122 at 853.903 kb on - strand, within GFF3122 at 854.017 kb on + strand at 854.017 kb on + strand at 854.415 kb on + strand, within GFF3123 at 854.416 kb on - strand, within GFF3123 at 854.502 kb on + strand, within GFF3123 at 854.502 kb on + strand, within GFF3123 at 854.502 kb on + strand, within GFF3123 at 854.503 kb on - strand, within GFF3123 at 854.503 kb on - strand, within GFF3123 at 854.503 kb on - strand, within GFF3123 at 855.000 kb on + strand at 855.000 kb on + strand at 855.001 kb on - strand at 855.001 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 852,252 + GFF3121 0.66 -0.2 852,253 + GFF3121 0.66 -1.5 852,253 + GFF3121 0.66 +1.5 852,254 - GFF3121 0.66 +0.2 852,474 + GFF3121 0.77 +0.2 852,474 + GFF3121 0.77 -0.7 852,475 - GFF3121 0.77 +1.7 852,475 - GFF3121 0.77 +0.1 852,727 - -0.5 852,813 + -0.0 852,813 + +0.2 852,814 - +0.3 852,814 - -0.4 852,814 - -0.2 852,814 - +0.5 852,814 - +0.0 852,814 - -0.3 852,969 - -1.8 852,969 - +0.3 853,118 + +0.6 853,119 - -0.4 853,200 + +0.4 853,200 + +0.5 853,201 - -0.2 853,383 - GFF3122 0.23 -0.1 853,609 + GFF3122 0.50 +0.3 853,609 + GFF3122 0.50 +2.0 853,630 + GFF3122 0.52 +1.3 853,900 + GFF3122 0.83 +1.1 853,900 + GFF3122 0.83 -0.6 853,900 + GFF3122 0.83 +1.1 853,900 + GFF3122 0.83 +0.3 853,901 - GFF3122 0.83 +0.5 853,901 - GFF3122 0.83 +0.9 853,901 - GFF3122 0.83 +0.4 853,901 - GFF3122 0.83 +0.1 853,901 - GFF3122 0.83 -2.3 853,901 - GFF3122 0.83 -0.0 853,901 - GFF3122 0.83 +0.8 853,902 + GFF3122 0.84 +0.7 853,902 + GFF3122 0.84 -0.4 853,902 + GFF3122 0.84 -0.2 853,902 + GFF3122 0.84 +0.2 853,902 + GFF3122 0.84 +1.1 853,902 + GFF3122 0.84 +0.1 853,903 - GFF3122 0.84 +0.7 853,903 - GFF3122 0.84 +0.4 853,903 - GFF3122 0.84 -0.5 853,903 - GFF3122 0.84 -0.4 854,017 + -0.2 854,017 + -0.4 854,415 + GFF3123 0.37 +0.0 854,416 - GFF3123 0.37 +0.2 854,502 + GFF3123 0.46 +0.8 854,502 + GFF3123 0.46 -1.0 854,502 + GFF3123 0.46 +0.1 854,503 - GFF3123 0.46 -0.3 854,503 - GFF3123 0.46 +1.5 854,503 - GFF3123 0.46 -0.9 855,000 + +1.0 855,000 + +1.2 855,001 - +0.8 855,001 - +0.6
Or see this region's nucleotide sequence