Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3114 and GFF3115 overlap by 4 nucleotides GFF3115 and GFF3116 overlap by 4 nucleotides GFF3116 and GFF3117 overlap by 4 nucleotides
GFF3114 - hypothetical protein, at 843,551 to 844,558
GFF3114
GFF3115 - hypothetical protein, at 844,555 to 845,637
GFF3115
GFF3116 - hypothetical protein, at 845,634 to 846,245
GFF3116
GFF3117 - hypothetical protein, at 846,242 to 846,928
GFF3117
Position (kb) 844
845
846 Strain fitness (log2 ratio) -2
-1
0
1 at 843.656 kb on + strand, within GFF3114 at 843.656 kb on + strand, within GFF3114 at 843.665 kb on + strand, within GFF3114 at 843.665 kb on + strand, within GFF3114 at 843.666 kb on - strand, within GFF3114 at 843.666 kb on - strand, within GFF3114 at 843.666 kb on - strand, within GFF3114 at 843.666 kb on - strand, within GFF3114 at 843.666 kb on - strand, within GFF3114 at 843.666 kb on - strand, within GFF3114 at 843.945 kb on - strand, within GFF3114 at 844.143 kb on - strand, within GFF3114 at 844.154 kb on + strand, within GFF3114 at 844.155 kb on - strand, within GFF3114 at 844.155 kb on - strand, within GFF3114 at 844.155 kb on - strand, within GFF3114 at 844.240 kb on + strand, within GFF3114 at 844.265 kb on - strand, within GFF3114 at 844.500 kb on + strand at 844.892 kb on - strand, within GFF3115 at 844.892 kb on - strand, within GFF3115 at 845.414 kb on + strand, within GFF3115 at 845.414 kb on + strand, within GFF3115 at 845.431 kb on + strand, within GFF3115 at 845.431 kb on + strand, within GFF3115 at 845.431 kb on + strand, within GFF3115 at 845.431 kb on + strand, within GFF3115 at 845.431 kb on + strand, within GFF3115 at 845.432 kb on - strand, within GFF3115 at 845.432 kb on - strand, within GFF3115 at 845.432 kb on - strand, within GFF3115 at 845.505 kb on - strand, within GFF3115 at 846.043 kb on + strand, within GFF3116 at 846.044 kb on - strand, within GFF3116 at 846.044 kb on - strand, within GFF3116 at 846.044 kb on - strand, within GFF3116 at 846.044 kb on - strand, within GFF3116 at 846.044 kb on - strand, within GFF3116 at 846.045 kb on + strand, within GFF3116 at 846.045 kb on + strand, within GFF3116 at 846.046 kb on - strand, within GFF3116 at 846.046 kb on - strand, within GFF3116 at 846.046 kb on - strand, within GFF3116 at 846.051 kb on - strand, within GFF3116
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 843,656 + GFF3114 0.10 +0.6 843,656 + GFF3114 0.10 -1.6 843,665 + GFF3114 0.11 +1.1 843,665 + GFF3114 0.11 -0.7 843,666 - GFF3114 0.11 -0.4 843,666 - GFF3114 0.11 -1.2 843,666 - GFF3114 0.11 -2.0 843,666 - GFF3114 0.11 +0.4 843,666 - GFF3114 0.11 +0.4 843,666 - GFF3114 0.11 -0.2 843,945 - GFF3114 0.39 -0.5 844,143 - GFF3114 0.59 -0.5 844,154 + GFF3114 0.60 -1.0 844,155 - GFF3114 0.60 +0.8 844,155 - GFF3114 0.60 +1.0 844,155 - GFF3114 0.60 +1.3 844,240 + GFF3114 0.68 +0.2 844,265 - GFF3114 0.71 -0.4 844,500 + +1.3 844,892 - GFF3115 0.31 -0.2 844,892 - GFF3115 0.31 -2.0 845,414 + GFF3115 0.79 +0.4 845,414 + GFF3115 0.79 -0.1 845,431 + GFF3115 0.81 -1.1 845,431 + GFF3115 0.81 +0.3 845,431 + GFF3115 0.81 -0.2 845,431 + GFF3115 0.81 +0.6 845,431 + GFF3115 0.81 -0.6 845,432 - GFF3115 0.81 +0.9 845,432 - GFF3115 0.81 +1.3 845,432 - GFF3115 0.81 +0.1 845,505 - GFF3115 0.88 -0.5 846,043 + GFF3116 0.67 +0.0 846,044 - GFF3116 0.67 -0.2 846,044 - GFF3116 0.67 -0.9 846,044 - GFF3116 0.67 -0.9 846,044 - GFF3116 0.67 -0.0 846,044 - GFF3116 0.67 -0.1 846,045 + GFF3116 0.67 -0.3 846,045 + GFF3116 0.67 -0.6 846,046 - GFF3116 0.67 -0.2 846,046 - GFF3116 0.67 +0.4 846,046 - GFF3116 0.67 -0.1 846,051 - GFF3116 0.68 +0.1
Or see this region's nucleotide sequence