Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3110 and GFF3111 are separated by 18 nucleotides GFF3111 and GFF3112 overlap by 23 nucleotides GFF3112 and GFF3113 overlap by 4 nucleotides GFF3113 and GFF3114 overlap by 4 nucleotides
GFF3110 - Type II secretion system protein G, at 841,500 to 841,952
GFF3110
GFF3111 - hypothetical protein, at 841,971 to 842,444
GFF3111
GFF3112 - hypothetical protein, at 842,422 to 842,832
GFF3112
GFF3113 - hypothetical protein, at 842,829 to 843,554
GFF3113
GFF3114 - hypothetical protein, at 843,551 to 844,558
GFF3114
Position (kb) 842
843
844 Strain fitness (log2 ratio) -2
-1
0
1 at 841.839 kb on + strand, within GFF3110 at 841.839 kb on + strand, within GFF3110 at 841.839 kb on + strand, within GFF3110 at 841.840 kb on - strand, within GFF3110 at 841.840 kb on - strand, within GFF3110 at 841.845 kb on + strand, within GFF3110 at 841.846 kb on - strand, within GFF3110 at 841.987 kb on - strand at 843.300 kb on + strand, within GFF3113 at 843.300 kb on + strand, within GFF3113 at 843.300 kb on + strand, within GFF3113 at 843.301 kb on - strand, within GFF3113 at 843.533 kb on + strand at 843.533 kb on + strand at 843.533 kb on + strand at 843.534 kb on - strand at 843.656 kb on + strand, within GFF3114 at 843.656 kb on + strand, within GFF3114 at 843.665 kb on + strand, within GFF3114 at 843.665 kb on + strand, within GFF3114 at 843.666 kb on - strand, within GFF3114 at 843.666 kb on - strand, within GFF3114 at 843.666 kb on - strand, within GFF3114 at 843.666 kb on - strand, within GFF3114 at 843.666 kb on - strand, within GFF3114 at 843.666 kb on - strand, within GFF3114 at 843.945 kb on - strand, within GFF3114 at 844.143 kb on - strand, within GFF3114 at 844.154 kb on + strand, within GFF3114 at 844.155 kb on - strand, within GFF3114 at 844.155 kb on - strand, within GFF3114 at 844.155 kb on - strand, within GFF3114 at 844.240 kb on + strand, within GFF3114 at 844.265 kb on - strand, within GFF3114 at 844.500 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 841,839 + GFF3110 0.75 -0.7 841,839 + GFF3110 0.75 +1.4 841,839 + GFF3110 0.75 +0.4 841,840 - GFF3110 0.75 -0.6 841,840 - GFF3110 0.75 -0.2 841,845 + GFF3110 0.76 +0.7 841,846 - GFF3110 0.76 +1.3 841,987 - -0.5 843,300 + GFF3113 0.65 +0.4 843,300 + GFF3113 0.65 -0.8 843,300 + GFF3113 0.65 +0.0 843,301 - GFF3113 0.65 -0.4 843,533 + -2.0 843,533 + +0.1 843,533 + +1.1 843,534 - -1.1 843,656 + GFF3114 0.10 +0.6 843,656 + GFF3114 0.10 -1.6 843,665 + GFF3114 0.11 +1.1 843,665 + GFF3114 0.11 -0.7 843,666 - GFF3114 0.11 -0.4 843,666 - GFF3114 0.11 -1.2 843,666 - GFF3114 0.11 -2.0 843,666 - GFF3114 0.11 +0.4 843,666 - GFF3114 0.11 +0.4 843,666 - GFF3114 0.11 -0.2 843,945 - GFF3114 0.39 -0.5 844,143 - GFF3114 0.59 -0.5 844,154 + GFF3114 0.60 -1.0 844,155 - GFF3114 0.60 +0.8 844,155 - GFF3114 0.60 +1.0 844,155 - GFF3114 0.60 +1.3 844,240 + GFF3114 0.68 +0.2 844,265 - GFF3114 0.71 -0.4 844,500 + +1.3
Or see this region's nucleotide sequence