Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF308 and GFF309 are separated by 37 nucleotides GFF309 and GFF310 overlap by 11 nucleotides GFF310 and GFF311 overlap by 4 nucleotides GFF311 and GFF312 are separated by 3 nucleotides
GFF308 - hypothetical protein, at 318,779 to 319,078
GFF308
GFF309 - hypothetical protein, at 319,116 to 319,613
GFF309
GFF310 - hypothetical protein, at 319,603 to 319,794
GFF310
GFF311 - hypothetical protein, at 319,791 to 321,044
GFF311
GFF312 - hypothetical protein, at 321,048 to 323,903
GFF312
Position (kb) 319
320
321
322 Strain fitness (log2 ratio) -2
-1
0
1 at 319.112 kb on + strand at 319.113 kb on - strand at 319.113 kb on - strand at 319.113 kb on - strand at 319.113 kb on - strand at 319.153 kb on - strand at 319.254 kb on + strand, within GFF309 at 319.420 kb on + strand, within GFF309 at 319.421 kb on - strand, within GFF309 at 319.545 kb on - strand, within GFF309 at 319.545 kb on - strand, within GFF309 at 319.545 kb on - strand, within GFF309 at 319.545 kb on - strand, within GFF309 at 319.621 kb on + strand at 319.621 kb on + strand at 319.622 kb on - strand at 319.622 kb on - strand at 319.622 kb on - strand at 319.704 kb on - strand, within GFF310 at 319.802 kb on - strand at 319.802 kb on - strand at 319.802 kb on - strand at 319.802 kb on - strand at 319.820 kb on - strand at 319.829 kb on + strand at 319.830 kb on - strand at 319.830 kb on - strand at 319.973 kb on - strand, within GFF311 at 319.973 kb on - strand, within GFF311 at 319.973 kb on - strand, within GFF311 at 320.349 kb on - strand, within GFF311 at 320.680 kb on - strand, within GFF311 at 320.911 kb on + strand, within GFF311 at 320.974 kb on + strand at 321.087 kb on + strand at 321.087 kb on + strand at 321.088 kb on - strand at 321.088 kb on - strand at 321.088 kb on - strand at 321.176 kb on + strand at 321.177 kb on - strand at 321.306 kb on + strand at 321.307 kb on - strand at 321.402 kb on - strand, within GFF312 at 321.494 kb on + strand, within GFF312 at 321.555 kb on + strand, within GFF312 at 321.555 kb on + strand, within GFF312 at 321.555 kb on + strand, within GFF312 at 321.556 kb on - strand, within GFF312 at 321.760 kb on - strand, within GFF312 at 321.760 kb on - strand, within GFF312 at 321.760 kb on - strand, within GFF312 at 321.760 kb on - strand, within GFF312 at 321.834 kb on + strand, within GFF312 at 321.835 kb on - strand, within GFF312 at 322.034 kb on + strand, within GFF312 at 322.034 kb on + strand, within GFF312
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 319,112 + +0.5 319,113 - -0.3 319,113 - -0.9 319,113 - +1.0 319,113 - +0.5 319,153 - +1.0 319,254 + GFF309 0.28 -0.2 319,420 + GFF309 0.61 +0.3 319,421 - GFF309 0.61 +0.4 319,545 - GFF309 0.86 -0.5 319,545 - GFF309 0.86 +0.2 319,545 - GFF309 0.86 +0.1 319,545 - GFF309 0.86 -0.5 319,621 + +0.5 319,621 + -0.6 319,622 - +0.5 319,622 - +0.7 319,622 - -0.2 319,704 - GFF310 0.53 -0.4 319,802 - -0.5 319,802 - -1.8 319,802 - -1.1 319,802 - -0.4 319,820 - +1.1 319,829 + -0.1 319,830 - -1.1 319,830 - +0.3 319,973 - GFF311 0.15 -0.5 319,973 - GFF311 0.15 -0.6 319,973 - GFF311 0.15 -0.6 320,349 - GFF311 0.44 -1.2 320,680 - GFF311 0.71 -0.7 320,911 + GFF311 0.89 +0.1 320,974 + -1.1 321,087 + -1.7 321,087 + -0.1 321,088 - -0.5 321,088 - -0.7 321,088 - -0.2 321,176 + -0.7 321,177 - -1.1 321,306 + -0.5 321,307 - -0.4 321,402 - GFF312 0.12 -0.2 321,494 + GFF312 0.16 -0.1 321,555 + GFF312 0.18 -0.4 321,555 + GFF312 0.18 +0.2 321,555 + GFF312 0.18 -1.8 321,556 - GFF312 0.18 -0.2 321,760 - GFF312 0.25 +0.1 321,760 - GFF312 0.25 +1.0 321,760 - GFF312 0.25 -1.3 321,760 - GFF312 0.25 +0.6 321,834 + GFF312 0.28 +1.0 321,835 - GFF312 0.28 -0.3 322,034 + GFF312 0.35 -0.9 322,034 + GFF312 0.35 -0.2
Or see this region's nucleotide sequence