Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3087 and GFF3088 are separated by 457 nucleotides GFF3088 and GFF3089 are separated by 38 nucleotides
GFF3087 - Threonine--tRNA ligase, at 815,654 to 817,630
GFF3087
GFF3088 - hypothetical protein, at 818,088 to 818,720
GFF3088
GFF3089 - Putative amino-acid ABC transporter-binding protein YhdW, at 818,759 to 819,772
GFF3089
Position (kb) 818
819 Strain fitness (log2 ratio) -2
-1
0
1 at 817.672 kb on - strand at 817.699 kb on - strand at 818.058 kb on + strand at 818.058 kb on + strand at 818.290 kb on - strand, within GFF3088 at 818.316 kb on - strand, within GFF3088 at 818.350 kb on - strand, within GFF3088 at 818.383 kb on - strand, within GFF3088 at 818.497 kb on - strand, within GFF3088 at 818.497 kb on - strand, within GFF3088 at 818.497 kb on - strand, within GFF3088 at 818.554 kb on - strand, within GFF3088 at 818.554 kb on - strand, within GFF3088 at 818.554 kb on - strand, within GFF3088 at 818.665 kb on - strand at 818.665 kb on - strand at 818.779 kb on - strand at 818.990 kb on + strand, within GFF3089 at 818.990 kb on + strand, within GFF3089 at 818.991 kb on - strand, within GFF3089 at 818.991 kb on - strand, within GFF3089 at 818.991 kb on - strand, within GFF3089 at 819.119 kb on + strand, within GFF3089 at 819.119 kb on + strand, within GFF3089 at 819.120 kb on - strand, within GFF3089 at 819.120 kb on - strand, within GFF3089 at 819.122 kb on + strand, within GFF3089 at 819.123 kb on - strand, within GFF3089 at 819.308 kb on + strand, within GFF3089 at 819.309 kb on - strand, within GFF3089 at 819.356 kb on + strand, within GFF3089 at 819.356 kb on + strand, within GFF3089 at 819.357 kb on - strand, within GFF3089 at 819.357 kb on - strand, within GFF3089 at 819.488 kb on + strand, within GFF3089 at 819.489 kb on - strand, within GFF3089 at 819.489 kb on - strand, within GFF3089 at 819.596 kb on + strand, within GFF3089 at 819.596 kb on + strand, within GFF3089 at 819.659 kb on + strand, within GFF3089 at 819.660 kb on - strand, within GFF3089
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 817,672 - +0.0 817,699 - -0.5 818,058 + -0.3 818,058 + +0.6 818,290 - GFF3088 0.32 +0.7 818,316 - GFF3088 0.36 +0.4 818,350 - GFF3088 0.41 -0.3 818,383 - GFF3088 0.47 +1.2 818,497 - GFF3088 0.65 -0.5 818,497 - GFF3088 0.65 +0.1 818,497 - GFF3088 0.65 +0.6 818,554 - GFF3088 0.74 +0.8 818,554 - GFF3088 0.74 -0.2 818,554 - GFF3088 0.74 +0.6 818,665 - +0.8 818,665 - +1.0 818,779 - +1.4 818,990 + GFF3089 0.23 -0.4 818,990 + GFF3089 0.23 +0.2 818,991 - GFF3089 0.23 -0.9 818,991 - GFF3089 0.23 +1.1 818,991 - GFF3089 0.23 -1.3 819,119 + GFF3089 0.36 +0.3 819,119 + GFF3089 0.36 +0.5 819,120 - GFF3089 0.36 +0.3 819,120 - GFF3089 0.36 -1.8 819,122 + GFF3089 0.36 +0.5 819,123 - GFF3089 0.36 +0.1 819,308 + GFF3089 0.54 -0.9 819,309 - GFF3089 0.54 -0.2 819,356 + GFF3089 0.59 -0.8 819,356 + GFF3089 0.59 -0.6 819,357 - GFF3089 0.59 +0.4 819,357 - GFF3089 0.59 +0.3 819,488 + GFF3089 0.72 +0.2 819,489 - GFF3089 0.72 -0.5 819,489 - GFF3089 0.72 -0.0 819,596 + GFF3089 0.83 +0.3 819,596 + GFF3089 0.83 +1.3 819,659 + GFF3089 0.89 -0.3 819,660 - GFF3089 0.89 +0.7
Or see this region's nucleotide sequence