Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3066 and GFF3067 are separated by 405 nucleotides GFF3067 and GFF3068 are separated by 34 nucleotides GFF3068 and GFF3069 are separated by 125 nucleotides
GFF3066 - Phospho-2-dehydro-3-deoxyheptonate aldolase, at 797,102 to 798,538
GFF3066
GFF3067 - hypothetical protein, at 798,944 to 799,390
GFF3067
GFF3068 - hypothetical protein, at 799,425 to 800,510
GFF3068
GFF3069 - hypothetical protein, at 800,636 to 801,856
GFF3069
Position (kb) 799
800
801 Strain fitness (log2 ratio) -1
0
1
2 at 798.548 kb on + strand at 798.548 kb on + strand at 798.548 kb on + strand at 798.593 kb on - strand at 798.948 kb on - strand at 798.948 kb on - strand at 798.948 kb on - strand at 799.275 kb on - strand, within GFF3067 at 799.388 kb on + strand at 799.690 kb on + strand, within GFF3068 at 799.690 kb on + strand, within GFF3068 at 799.691 kb on - strand, within GFF3068 at 799.966 kb on + strand, within GFF3068 at 800.158 kb on + strand, within GFF3068 at 800.198 kb on - strand, within GFF3068 at 800.501 kb on + strand at 800.502 kb on - strand at 800.637 kb on + strand at 800.763 kb on + strand, within GFF3069 at 800.764 kb on - strand, within GFF3069 at 800.898 kb on + strand, within GFF3069 at 800.898 kb on + strand, within GFF3069 at 800.899 kb on - strand, within GFF3069 at 800.916 kb on + strand, within GFF3069 at 801.009 kb on + strand, within GFF3069 at 801.009 kb on + strand, within GFF3069 at 801.009 kb on + strand, within GFF3069 at 801.010 kb on - strand, within GFF3069 at 801.217 kb on - strand, within GFF3069 at 801.324 kb on + strand, within GFF3069 at 801.325 kb on - strand, within GFF3069 at 801.408 kb on + strand, within GFF3069 at 801.408 kb on + strand, within GFF3069 at 801.408 kb on + strand, within GFF3069 at 801.409 kb on - strand, within GFF3069 at 801.409 kb on - strand, within GFF3069 at 801.409 kb on - strand, within GFF3069 at 801.409 kb on - strand, within GFF3069 at 801.409 kb on - strand, within GFF3069 at 801.409 kb on - strand, within GFF3069
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 798,548 + -0.4 798,548 + +0.3 798,548 + -0.8 798,593 - +0.7 798,948 - -0.4 798,948 - -0.9 798,948 - +0.5 799,275 - GFF3067 0.74 +0.5 799,388 + -0.5 799,690 + GFF3068 0.24 +0.6 799,690 + GFF3068 0.24 +0.8 799,691 - GFF3068 0.24 +0.1 799,966 + GFF3068 0.50 +0.4 800,158 + GFF3068 0.67 +0.4 800,198 - GFF3068 0.71 +0.5 800,501 + +0.1 800,502 - -1.2 800,637 + +0.9 800,763 + GFF3069 0.10 -0.0 800,764 - GFF3069 0.10 +0.0 800,898 + GFF3069 0.21 +0.3 800,898 + GFF3069 0.21 +0.8 800,899 - GFF3069 0.22 -0.2 800,916 + GFF3069 0.23 +0.1 801,009 + GFF3069 0.31 -0.5 801,009 + GFF3069 0.31 -0.3 801,009 + GFF3069 0.31 +0.5 801,010 - GFF3069 0.31 +0.3 801,217 - GFF3069 0.48 +2.3 801,324 + GFF3069 0.56 +0.4 801,325 - GFF3069 0.56 +0.3 801,408 + GFF3069 0.63 -0.2 801,408 + GFF3069 0.63 +0.1 801,408 + GFF3069 0.63 +0.3 801,409 - GFF3069 0.63 -0.3 801,409 - GFF3069 0.63 +1.0 801,409 - GFF3069 0.63 +0.5 801,409 - GFF3069 0.63 -0.3 801,409 - GFF3069 0.63 +0.1 801,409 - GFF3069 0.63 +1.1
Or see this region's nucleotide sequence