Strain Fitness in Xanthobacter sp. DMC5 around GFF3061

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3059 and GFF3060 are separated by 139 nucleotidesGFF3060 and GFF3061 are separated by 24 nucleotidesGFF3061 and GFF3062 are separated by 241 nucleotides GFF3059 - hypothetical protein, at 788,469 to 788,936 GFF3059 GFF3060 - Ribose-5-phosphate isomerase A, at 789,076 to 789,783 GFF3060 GFF3061 - hypothetical protein, at 789,808 to 790,368 GFF3061 GFF3062 - hypothetical protein, at 790,610 to 792,724 GFF3062 Position (kb) 789 790 791Strain fitness (log2 ratio) -2 -1 0 1at 788.866 kb on - strand, within GFF3059at 788.975 kb on - strandat 789.782 kb on - strandat 790.168 kb on + strand, within GFF3061at 790.168 kb on + strand, within GFF3061at 790.216 kb on + strand, within GFF3061at 790.611 kb on + strandat 790.612 kb on - strandat 790.612 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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788,866 - GFF3059 0.85 +0.9
788,975 - +0.2
789,782 - -2.0
790,168 + GFF3061 0.64 -0.7
790,168 + GFF3061 0.64 +0.4
790,216 + GFF3061 0.73 -0.1
790,611 + +0.5
790,612 - +0.5
790,612 - +1.0

Or see this region's nucleotide sequence