Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3049 and GFF3050 are separated by 483 nucleotides GFF3050 and GFF3051 are separated by 71 nucleotides GFF3051 and GFF3052 are separated by 153 nucleotides
GFF3049 - hypothetical protein, at 779,325 to 780,341
GFF3049
GFF3050 - Cold shock protein CspA, at 780,825 to 781,031
GFF3050
GFF3051 - hypothetical protein, at 781,103 to 781,687
GFF3051
GFF3052 - AB hydrolase superfamily protein YdjP, at 781,841 to 782,701
GFF3052
Position (kb) 780
781
782 Strain fitness (log2 ratio) -1
0
1 at 779.903 kb on + strand, within GFF3049 at 779.904 kb on - strand, within GFF3049 at 780.006 kb on + strand, within GFF3049 at 780.006 kb on + strand, within GFF3049 at 780.135 kb on + strand, within GFF3049 at 780.135 kb on + strand, within GFF3049 at 780.135 kb on + strand, within GFF3049 at 780.193 kb on - strand, within GFF3049 at 780.229 kb on - strand, within GFF3049 at 780.479 kb on + strand at 780.479 kb on + strand at 780.480 kb on - strand at 780.480 kb on - strand at 780.480 kb on - strand at 780.552 kb on + strand at 780.552 kb on + strand at 780.553 kb on - strand at 780.942 kb on + strand, within GFF3050 at 780.943 kb on - strand, within GFF3050 at 781.116 kb on + strand at 781.116 kb on + strand at 781.117 kb on - strand at 781.146 kb on + strand at 781.240 kb on - strand, within GFF3051 at 781.257 kb on + strand, within GFF3051 at 781.258 kb on - strand, within GFF3051 at 781.258 kb on - strand, within GFF3051 at 781.302 kb on + strand, within GFF3051 at 781.302 kb on + strand, within GFF3051 at 781.302 kb on + strand, within GFF3051 at 781.303 kb on - strand, within GFF3051 at 781.384 kb on + strand, within GFF3051 at 781.455 kb on - strand, within GFF3051 at 781.455 kb on - strand, within GFF3051 at 781.462 kb on - strand, within GFF3051 at 781.843 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 779,903 + GFF3049 0.57 +0.1 779,904 - GFF3049 0.57 -0.9 780,006 + GFF3049 0.67 +0.9 780,006 + GFF3049 0.67 +0.3 780,135 + GFF3049 0.80 +0.5 780,135 + GFF3049 0.80 +0.4 780,135 + GFF3049 0.80 +0.8 780,193 - GFF3049 0.85 +0.4 780,229 - GFF3049 0.89 +0.2 780,479 + +1.1 780,479 + -1.3 780,480 - -0.3 780,480 - -0.1 780,480 - +0.6 780,552 + -0.5 780,552 + +0.7 780,553 - -0.4 780,942 + GFF3050 0.57 -1.3 780,943 - GFF3050 0.57 -0.0 781,116 + +1.0 781,116 + +0.3 781,117 - -0.1 781,146 + -0.4 781,240 - GFF3051 0.23 +0.7 781,257 + GFF3051 0.26 +0.2 781,258 - GFF3051 0.26 -0.0 781,258 - GFF3051 0.26 -0.6 781,302 + GFF3051 0.34 -0.8 781,302 + GFF3051 0.34 +0.0 781,302 + GFF3051 0.34 +0.1 781,303 - GFF3051 0.34 +0.3 781,384 + GFF3051 0.48 -0.4 781,455 - GFF3051 0.60 -0.2 781,455 - GFF3051 0.60 -0.7 781,462 - GFF3051 0.61 -0.9 781,843 - +0.2
Or see this region's nucleotide sequence