Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3046 and GFF3047 are separated by 152 nucleotides GFF3047 and GFF3048 are separated by 3 nucleotides GFF3048 and GFF3049 are separated by 20 nucleotides
GFF3046 - hypothetical protein, at 774,563 to 777,526
GFF3046
GFF3047 - Bicarbonate transport ATP-binding protein CmpD, at 777,679 to 778,491
GFF3047
GFF3048 - Riboflavin transport system permease protein RibX, at 778,495 to 779,304
GFF3048
GFF3049 - hypothetical protein, at 779,325 to 780,341
GFF3049
Position (kb) 778
779
780 Strain fitness (log2 ratio) -2
-1
0
1 at 777.503 kb on + strand at 778.314 kb on + strand, within GFF3047 at 778.361 kb on + strand, within GFF3047 at 778.362 kb on - strand, within GFF3047 at 779.123 kb on - strand, within GFF3048 at 779.123 kb on - strand, within GFF3048 at 779.150 kb on - strand, within GFF3048 at 779.228 kb on + strand at 779.228 kb on + strand at 779.229 kb on - strand at 779.229 kb on - strand at 779.452 kb on - strand, within GFF3049 at 779.454 kb on + strand, within GFF3049 at 779.454 kb on + strand, within GFF3049 at 779.454 kb on + strand, within GFF3049 at 779.455 kb on - strand, within GFF3049 at 779.592 kb on + strand, within GFF3049 at 779.593 kb on - strand, within GFF3049 at 779.817 kb on + strand, within GFF3049 at 779.818 kb on - strand, within GFF3049 at 779.818 kb on - strand, within GFF3049 at 779.818 kb on - strand, within GFF3049 at 779.821 kb on + strand, within GFF3049 at 779.903 kb on + strand, within GFF3049 at 779.904 kb on - strand, within GFF3049 at 780.006 kb on + strand, within GFF3049 at 780.006 kb on + strand, within GFF3049 at 780.135 kb on + strand, within GFF3049 at 780.135 kb on + strand, within GFF3049 at 780.135 kb on + strand, within GFF3049 at 780.193 kb on - strand, within GFF3049 at 780.229 kb on - strand, within GFF3049
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 777,503 + -0.2 778,314 + GFF3047 0.78 +0.3 778,361 + GFF3047 0.84 +0.5 778,362 - GFF3047 0.84 -1.8 779,123 - GFF3048 0.78 -1.0 779,123 - GFF3048 0.78 -0.0 779,150 - GFF3048 0.81 -0.9 779,228 + -0.3 779,228 + +0.4 779,229 - +1.1 779,229 - +1.3 779,452 - GFF3049 0.12 +0.4 779,454 + GFF3049 0.13 -0.6 779,454 + GFF3049 0.13 +0.3 779,454 + GFF3049 0.13 -0.4 779,455 - GFF3049 0.13 -0.3 779,592 + GFF3049 0.26 -1.2 779,593 - GFF3049 0.26 +0.3 779,817 + GFF3049 0.48 +1.7 779,818 - GFF3049 0.48 +0.2 779,818 - GFF3049 0.48 +0.1 779,818 - GFF3049 0.48 -0.0 779,821 + GFF3049 0.49 -1.6 779,903 + GFF3049 0.57 +0.1 779,904 - GFF3049 0.57 -0.9 780,006 + GFF3049 0.67 +0.9 780,006 + GFF3049 0.67 +0.3 780,135 + GFF3049 0.80 +0.5 780,135 + GFF3049 0.80 +0.4 780,135 + GFF3049 0.80 +0.8 780,193 - GFF3049 0.85 +0.4 780,229 - GFF3049 0.89 +0.2
Or see this region's nucleotide sequence