Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3035 and GFF3036 are separated by 147 nucleotides GFF3036 and GFF3037 are separated by 40 nucleotides GFF3037 and GFF3038 are separated by 115 nucleotides
GFF3035 - 26 kDa periplasmic immunogenic protein, at 759,981 to 760,733
GFF3035
GFF3036 - hypothetical protein, at 760,881 to 762,164
GFF3036
GFF3037 - hypothetical protein, at 762,205 to 763,002
GFF3037
GFF3038 - Glutaminase, at 763,118 to 764,962
GFF3038
Position (kb) 760
761
762
763 Strain fitness (log2 ratio) -1
0
1
2 at 759.974 kb on + strand at 760.145 kb on + strand, within GFF3035 at 760.145 kb on + strand, within GFF3035 at 760.146 kb on - strand, within GFF3035 at 760.311 kb on + strand, within GFF3035 at 760.713 kb on + strand at 760.778 kb on - strand at 760.844 kb on - strand at 760.844 kb on - strand at 760.950 kb on + strand at 760.950 kb on + strand at 760.951 kb on - strand at 761.094 kb on + strand, within GFF3036 at 761.094 kb on + strand, within GFF3036 at 761.094 kb on + strand, within GFF3036 at 761.094 kb on + strand, within GFF3036 at 761.095 kb on - strand, within GFF3036 at 761.145 kb on + strand, within GFF3036 at 761.146 kb on - strand, within GFF3036 at 761.146 kb on - strand, within GFF3036 at 761.151 kb on + strand, within GFF3036 at 761.151 kb on + strand, within GFF3036 at 762.143 kb on + strand at 762.233 kb on + strand at 762.599 kb on + strand, within GFF3037 at 762.600 kb on - strand, within GFF3037 at 762.600 kb on - strand, within GFF3037 at 762.611 kb on - strand, within GFF3037 at 762.797 kb on + strand, within GFF3037 at 762.797 kb on + strand, within GFF3037 at 762.851 kb on + strand, within GFF3037 at 762.851 kb on + strand, within GFF3037 at 762.851 kb on + strand, within GFF3037 at 762.852 kb on - strand, within GFF3037 at 762.994 kb on - strand at 763.059 kb on + strand at 763.059 kb on + strand at 763.059 kb on + strand at 763.060 kb on - strand at 763.060 kb on - strand at 763.060 kb on - strand at 763.092 kb on + strand at 763.093 kb on - strand at 763.119 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 759,974 + -0.3 760,145 + GFF3035 0.22 +0.5 760,145 + GFF3035 0.22 +0.2 760,146 - GFF3035 0.22 +1.1 760,311 + GFF3035 0.44 +1.0 760,713 + +0.3 760,778 - -0.1 760,844 - +0.5 760,844 - +1.8 760,950 + +0.0 760,950 + +0.8 760,951 - +1.2 761,094 + GFF3036 0.17 +0.5 761,094 + GFF3036 0.17 +0.8 761,094 + GFF3036 0.17 +0.2 761,094 + GFF3036 0.17 -1.3 761,095 - GFF3036 0.17 +0.1 761,145 + GFF3036 0.21 -1.5 761,146 - GFF3036 0.21 +1.1 761,146 - GFF3036 0.21 +0.7 761,151 + GFF3036 0.21 +2.4 761,151 + GFF3036 0.21 +1.5 762,143 + +0.3 762,233 + -0.4 762,599 + GFF3037 0.49 +1.0 762,600 - GFF3037 0.49 -1.4 762,600 - GFF3037 0.49 -0.1 762,611 - GFF3037 0.51 -1.2 762,797 + GFF3037 0.74 +2.1 762,797 + GFF3037 0.74 -1.7 762,851 + GFF3037 0.81 +0.7 762,851 + GFF3037 0.81 +0.8 762,851 + GFF3037 0.81 +0.3 762,852 - GFF3037 0.81 +0.6 762,994 - -0.1 763,059 + +0.5 763,059 + +0.3 763,059 + -0.3 763,060 - +0.6 763,060 - -0.5 763,060 - +0.2 763,092 + +0.4 763,093 - -0.7 763,119 + -0.0
Or see this region's nucleotide sequence