Strain Fitness in Xanthobacter sp. DMC5 around GFF299

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF296 and GFF297 overlap by 4 nucleotidesGFF297 and GFF298 overlap by 14 nucleotidesGFF298 and GFF299 are separated by 9 nucleotidesGFF299 and GFF300 are separated by 3 nucleotidesGFF300 and GFF301 overlap by 4 nucleotides GFF296 - hypothetical protein, at 311,659 to 312,783 GFF296 GFF297 - hypothetical protein, at 312,780 to 313,031 GFF297 GFF298 - hypothetical protein, at 313,018 to 313,233 GFF298 GFF299 - Single-stranded DNA-binding protein, at 313,243 to 313,668 GFF299 GFF300 - ATP-dependent zinc metalloprotease FtsH, at 313,672 to 314,595 GFF300 GFF301 - hypothetical protein, at 314,592 to 315,494 GFF301 Position (kb) 313 314Strain fitness (log2 ratio) -2 -1 0 1 2at 312.398 kb on + strand, within GFF296at 312.398 kb on + strand, within GFF296at 312.398 kb on + strand, within GFF296at 312.629 kb on + strand, within GFF296at 312.629 kb on + strand, within GFF296at 312.630 kb on - strand, within GFF296at 312.630 kb on - strand, within GFF296at 312.704 kb on + strandat 312.704 kb on + strandat 312.705 kb on - strandat 312.705 kb on - strandat 312.705 kb on - strandat 312.705 kb on - strandat 312.705 kb on - strandat 312.705 kb on - strandat 312.705 kb on - strandat 312.740 kb on + strandat 312.741 kb on - strandat 312.741 kb on - strandat 312.741 kb on - strandat 312.746 kb on + strandat 312.746 kb on + strandat 312.746 kb on + strandat 312.747 kb on - strandat 312.747 kb on - strandat 312.747 kb on - strandat 312.747 kb on - strandat 312.747 kb on - strandat 312.747 kb on - strandat 312.747 kb on - strandat 312.747 kb on - strandat 312.784 kb on - strandat 312.936 kb on + strand, within GFF297at 312.960 kb on - strand, within GFF297at 312.961 kb on + strand, within GFF297at 312.961 kb on + strand, within GFF297at 312.961 kb on + strand, within GFF297at 313.194 kb on - strand, within GFF298at 313.194 kb on - strand, within GFF298at 313.289 kb on + strand, within GFF299at 313.379 kb on + strand, within GFF299at 313.380 kb on - strand, within GFF299at 313.387 kb on + strand, within GFF299at 313.387 kb on + strand, within GFF299at 313.387 kb on + strand, within GFF299at 313.387 kb on + strand, within GFF299at 313.387 kb on + strand, within GFF299at 313.387 kb on + strand, within GFF299at 313.387 kb on + strand, within GFF299at 313.387 kb on + strand, within GFF299at 313.388 kb on - strand, within GFF299at 313.388 kb on - strand, within GFF299at 313.388 kb on - strand, within GFF299at 313.436 kb on + strand, within GFF299at 313.491 kb on + strand, within GFF299at 313.493 kb on + strand, within GFF299at 313.493 kb on + strand, within GFF299at 313.493 kb on + strand, within GFF299at 313.493 kb on + strand, within GFF299at 313.494 kb on - strand, within GFF299at 313.494 kb on - strand, within GFF299at 313.494 kb on - strand, within GFF299at 313.494 kb on - strand, within GFF299at 313.634 kb on + strandat 313.634 kb on + strandat 313.635 kb on - strandat 313.686 kb on + strandat 313.686 kb on + strandat 313.686 kb on + strandat 313.971 kb on - strand, within GFF300at 313.971 kb on - strand, within GFF300at 313.971 kb on - strand, within GFF300at 314.119 kb on + strand, within GFF300at 314.384 kb on + strand, within GFF300at 314.384 kb on + strand, within GFF300at 314.384 kb on + strand, within GFF300at 314.385 kb on - strand, within GFF300at 314.462 kb on + strand, within GFF300at 314.463 kb on - strand, within GFF300at 314.463 kb on - strand, within GFF300at 314.463 kb on - strand, within GFF300at 314.463 kb on - strand, within GFF300at 314.463 kb on - strand, within GFF300at 314.545 kb on - strandat 314.545 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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312,398 + GFF296 0.66 +0.9
312,398 + GFF296 0.66 -0.5
312,398 + GFF296 0.66 +0.8
312,629 + GFF296 0.86 -0.9
312,629 + GFF296 0.86 -1.9
312,630 - GFF296 0.86 -0.9
312,630 - GFF296 0.86 -0.4
312,704 + -0.2
312,704 + +0.8
312,705 - -0.3
312,705 - +1.0
312,705 - -1.6
312,705 - -0.2
312,705 - +1.8
312,705 - +0.7
312,705 - +0.2
312,740 + +0.2
312,741 - +0.7
312,741 - +0.9
312,741 - +0.0
312,746 + +0.2
312,746 + -0.0
312,746 + +0.7
312,747 - +0.4
312,747 - +2.5
312,747 - +0.5
312,747 - +0.1
312,747 - -0.0
312,747 - -0.2
312,747 - -0.5
312,747 - +2.1
312,784 - +0.4
312,936 + GFF297 0.62 -1.8
312,960 - GFF297 0.71 +0.6
312,961 + GFF297 0.72 -0.4
312,961 + GFF297 0.72 -0.3
312,961 + GFF297 0.72 +0.1
313,194 - GFF298 0.81 +0.9
313,194 - GFF298 0.81 +0.9
313,289 + GFF299 0.11 +0.2
313,379 + GFF299 0.32 -0.3
313,380 - GFF299 0.32 -1.1
313,387 + GFF299 0.34 +0.8
313,387 + GFF299 0.34 +0.1
313,387 + GFF299 0.34 +0.5
313,387 + GFF299 0.34 +0.2
313,387 + GFF299 0.34 +0.9
313,387 + GFF299 0.34 -0.7
313,387 + GFF299 0.34 +0.7
313,387 + GFF299 0.34 -1.3
313,388 - GFF299 0.34 +0.7
313,388 - GFF299 0.34 +0.6
313,388 - GFF299 0.34 -0.3
313,436 + GFF299 0.45 -0.8
313,491 + GFF299 0.58 +0.1
313,493 + GFF299 0.59 -1.3
313,493 + GFF299 0.59 -1.3
313,493 + GFF299 0.59 -0.7
313,493 + GFF299 0.59 -1.6
313,494 - GFF299 0.59 -0.9
313,494 - GFF299 0.59 +0.1
313,494 - GFF299 0.59 -0.8
313,494 - GFF299 0.59 -0.2
313,634 + +0.5
313,634 + +0.7
313,635 - +0.8
313,686 + +0.4
313,686 + +0.3
313,686 + -1.0
313,971 - GFF300 0.32 -0.6
313,971 - GFF300 0.32 -0.3
313,971 - GFF300 0.32 -0.1
314,119 + GFF300 0.48 -1.5
314,384 + GFF300 0.77 +0.4
314,384 + GFF300 0.77 -1.7
314,384 + GFF300 0.77 +0.4
314,385 - GFF300 0.77 -0.2
314,462 + GFF300 0.85 +1.1
314,463 - GFF300 0.86 -0.1
314,463 - GFF300 0.86 -0.0
314,463 - GFF300 0.86 -0.0
314,463 - GFF300 0.86 -0.6
314,463 - GFF300 0.86 -0.0
314,545 - -0.5
314,545 - +0.1

Or see this region's nucleotide sequence