Strain Fitness in Xanthobacter sp. DMC5 around GFF2982

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2980 and GFF2981 are separated by 124 nucleotidesGFF2981 and GFF2982 overlap by 4 nucleotidesGFF2982 and GFF2983 are separated by 38 nucleotidesGFF2983 and GFF2984 are separated by 12 nucleotides GFF2980 - hypothetical protein, at 703,747 to 704,649 GFF2980 GFF2981 - KDP operon transcriptional regulatory protein KdpE, at 704,774 to 705,463 GFF2981 GFF2982 - Sensor protein KdpD, at 705,460 to 708,177 GFF2982 GFF2983 - Potassium-transporting ATPase KdpC subunit, at 708,216 to 708,824 GFF2983 GFF2984 - Potassium-transporting ATPase ATP-binding subunit, at 708,837 to 710,900 GFF2984 Position (kb) 705 706 707 708 709Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 704.647 kb on + strandat 704.648 kb on - strandat 704.823 kb on + strandat 704.886 kb on + strand, within GFF2981at 704.928 kb on + strand, within GFF2981at 704.929 kb on - strand, within GFF2981at 704.929 kb on - strand, within GFF2981at 704.972 kb on + strand, within GFF2981at 704.972 kb on + strand, within GFF2981at 704.982 kb on + strand, within GFF2981at 704.982 kb on + strand, within GFF2981at 704.982 kb on + strand, within GFF2981at 704.983 kb on - strand, within GFF2981at 704.983 kb on - strand, within GFF2981at 705.159 kb on + strand, within GFF2981at 705.159 kb on + strand, within GFF2981at 705.159 kb on + strand, within GFF2981at 705.160 kb on - strand, within GFF2981at 705.160 kb on - strand, within GFF2981at 705.160 kb on - strand, within GFF2981at 705.160 kb on - strand, within GFF2981at 705.160 kb on - strand, within GFF2981at 705.829 kb on + strand, within GFF2982at 706.427 kb on + strand, within GFF2982at 706.428 kb on - strand, within GFF2982at 706.428 kb on - strand, within GFF2982at 706.622 kb on + strand, within GFF2982at 706.622 kb on + strand, within GFF2982at 706.623 kb on - strand, within GFF2982at 706.766 kb on + strand, within GFF2982at 706.766 kb on + strand, within GFF2982at 706.767 kb on - strand, within GFF2982at 706.767 kb on - strand, within GFF2982at 706.788 kb on - strand, within GFF2982at 707.174 kb on + strand, within GFF2982at 707.174 kb on + strand, within GFF2982at 707.315 kb on + strand, within GFF2982at 707.316 kb on - strand, within GFF2982at 707.316 kb on - strand, within GFF2982at 707.316 kb on - strand, within GFF2982at 707.316 kb on - strand, within GFF2982at 707.363 kb on + strand, within GFF2982at 707.364 kb on - strand, within GFF2982at 707.543 kb on + strand, within GFF2982at 707.543 kb on + strand, within GFF2982at 707.543 kb on + strand, within GFF2982at 707.543 kb on + strand, within GFF2982at 707.543 kb on + strand, within GFF2982at 707.543 kb on + strand, within GFF2982at 707.544 kb on - strand, within GFF2982at 707.544 kb on - strand, within GFF2982at 707.544 kb on - strand, within GFF2982at 707.544 kb on - strand, within GFF2982at 707.544 kb on - strand, within GFF2982at 707.579 kb on + strand, within GFF2982at 707.579 kb on + strand, within GFF2982at 707.579 kb on + strand, within GFF2982at 707.580 kb on - strand, within GFF2982at 707.580 kb on - strand, within GFF2982at 707.580 kb on - strand, within GFF2982at 707.580 kb on - strand, within GFF2982at 707.753 kb on + strand, within GFF2982at 707.753 kb on + strand, within GFF2982at 707.753 kb on + strand, within GFF2982at 707.796 kb on - strand, within GFF2982at 707.796 kb on - strand, within GFF2982at 708.053 kb on + strandat 708.054 kb on - strandat 708.054 kb on - strandat 708.217 kb on + strandat 708.218 kb on - strandat 708.218 kb on - strandat 708.559 kb on + strand, within GFF2983at 708.559 kb on + strand, within GFF2983at 708.559 kb on + strand, within GFF2983at 708.560 kb on - strand, within GFF2983at 708.758 kb on - strand, within GFF2983at 708.917 kb on - strandat 709.127 kb on - strand, within GFF2984

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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704,647 + -0.4
704,648 - -0.1
704,823 + -3.1
704,886 + GFF2981 0.16 -2.0
704,928 + GFF2981 0.22 +0.2
704,929 - GFF2981 0.22 -0.0
704,929 - GFF2981 0.22 -0.3
704,972 + GFF2981 0.29 -0.5
704,972 + GFF2981 0.29 +0.4
704,982 + GFF2981 0.30 -0.2
704,982 + GFF2981 0.30 -1.3
704,982 + GFF2981 0.30 -1.0
704,983 - GFF2981 0.30 -2.3
704,983 - GFF2981 0.30 -0.3
705,159 + GFF2981 0.56 -0.7
705,159 + GFF2981 0.56 -0.4
705,159 + GFF2981 0.56 -1.9
705,160 - GFF2981 0.56 +0.3
705,160 - GFF2981 0.56 -0.1
705,160 - GFF2981 0.56 -1.6
705,160 - GFF2981 0.56 -1.7
705,160 - GFF2981 0.56 -0.1
705,829 + GFF2982 0.14 +0.1
706,427 + GFF2982 0.36 +0.2
706,428 - GFF2982 0.36 +0.1
706,428 - GFF2982 0.36 +0.2
706,622 + GFF2982 0.43 -0.3
706,622 + GFF2982 0.43 +0.7
706,623 - GFF2982 0.43 -0.9
706,766 + GFF2982 0.48 -0.1
706,766 + GFF2982 0.48 +0.8
706,767 - GFF2982 0.48 -0.5
706,767 - GFF2982 0.48 -0.2
706,788 - GFF2982 0.49 -0.5
707,174 + GFF2982 0.63 +0.3
707,174 + GFF2982 0.63 +0.6
707,315 + GFF2982 0.68 +0.6
707,316 - GFF2982 0.68 -0.2
707,316 - GFF2982 0.68 -0.1
707,316 - GFF2982 0.68 +0.3
707,316 - GFF2982 0.68 -0.0
707,363 + GFF2982 0.70 -0.7
707,364 - GFF2982 0.70 -0.5
707,543 + GFF2982 0.77 -1.2
707,543 + GFF2982 0.77 +0.2
707,543 + GFF2982 0.77 +0.8
707,543 + GFF2982 0.77 -0.2
707,543 + GFF2982 0.77 -3.0
707,543 + GFF2982 0.77 +1.3
707,544 - GFF2982 0.77 +2.0
707,544 - GFF2982 0.77 -0.4
707,544 - GFF2982 0.77 -0.8
707,544 - GFF2982 0.77 -0.6
707,544 - GFF2982 0.77 +0.0
707,579 + GFF2982 0.78 +0.4
707,579 + GFF2982 0.78 -0.6
707,579 + GFF2982 0.78 -0.3
707,580 - GFF2982 0.78 -0.2
707,580 - GFF2982 0.78 +0.3
707,580 - GFF2982 0.78 +0.4
707,580 - GFF2982 0.78 +0.1
707,753 + GFF2982 0.84 +0.5
707,753 + GFF2982 0.84 +0.8
707,753 + GFF2982 0.84 -0.3
707,796 - GFF2982 0.86 -0.2
707,796 - GFF2982 0.86 -2.1
708,053 + +0.0
708,054 - -1.1
708,054 - +0.0
708,217 + -0.5
708,218 - +0.2
708,218 - -1.4
708,559 + GFF2983 0.56 -1.7
708,559 + GFF2983 0.56 -1.5
708,559 + GFF2983 0.56 +0.2
708,560 - GFF2983 0.56 +2.3
708,758 - GFF2983 0.89 +0.3
708,917 - +0.0
709,127 - GFF2984 0.14 -2.2

Or see this region's nucleotide sequence