Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2975 and GFF2976 are separated by 88 nucleotides GFF2976 and GFF2977 are separated by 177 nucleotides GFF2977 and GFF2978 are separated by 46 nucleotides
GFF2975 - hypothetical protein, at 700,217 to 700,651
GFF2975
GFF2976 - hypothetical protein, at 700,740 to 701,702
GFF2976
GFF2977 - hypothetical protein, at 701,880 to 702,374
GFF2977
GFF2978 - hypothetical protein, at 702,421 to 703,332
GFF2978
Position (kb) 700
701
702 Strain fitness (log2 ratio) -2
-1
0
1
2 at 699.748 kb on - strand at 699.818 kb on - strand at 699.865 kb on - strand at 699.906 kb on + strand at 699.965 kb on - strand at 700.010 kb on + strand at 700.010 kb on + strand at 700.010 kb on + strand at 700.010 kb on + strand at 700.010 kb on + strand at 700.010 kb on + strand at 700.010 kb on + strand at 700.010 kb on + strand at 700.011 kb on - strand at 700.011 kb on - strand at 700.011 kb on - strand at 700.011 kb on - strand at 700.011 kb on - strand at 700.011 kb on - strand at 700.011 kb on - strand at 700.014 kb on + strand at 700.015 kb on - strand at 700.265 kb on - strand, within GFF2975 at 700.265 kb on - strand, within GFF2975 at 700.499 kb on + strand, within GFF2975 at 700.500 kb on - strand, within GFF2975 at 700.707 kb on + strand at 700.917 kb on + strand, within GFF2976 at 700.924 kb on - strand, within GFF2976 at 700.966 kb on - strand, within GFF2976 at 700.966 kb on - strand, within GFF2976 at 700.966 kb on - strand, within GFF2976 at 701.040 kb on + strand, within GFF2976 at 701.041 kb on - strand, within GFF2976 at 701.041 kb on - strand, within GFF2976 at 701.061 kb on + strand, within GFF2976 at 701.062 kb on - strand, within GFF2976 at 701.062 kb on - strand, within GFF2976 at 701.300 kb on + strand, within GFF2976 at 701.300 kb on + strand, within GFF2976 at 701.300 kb on + strand, within GFF2976 at 701.300 kb on + strand, within GFF2976 at 701.301 kb on - strand, within GFF2976 at 701.742 kb on + strand at 702.592 kb on + strand, within GFF2978 at 702.592 kb on + strand, within GFF2978 at 702.592 kb on + strand, within GFF2978 at 702.593 kb on - strand, within GFF2978 at 702.628 kb on + strand, within GFF2978 at 702.629 kb on - strand, within GFF2978 at 702.629 kb on - strand, within GFF2978 at 702.629 kb on - strand, within GFF2978 at 702.640 kb on + strand, within GFF2978 at 702.641 kb on - strand, within GFF2978
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 699,748 - -0.5 699,818 - +0.4 699,865 - -0.8 699,906 + -0.7 699,965 - +0.9 700,010 + -1.9 700,010 + +0.5 700,010 + -0.2 700,010 + +1.0 700,010 + +1.0 700,010 + -0.2 700,010 + -0.8 700,010 + -0.1 700,011 - +0.5 700,011 - -1.2 700,011 - -0.4 700,011 - -0.4 700,011 - -0.5 700,011 - -0.5 700,011 - -1.1 700,014 + +1.3 700,015 - -1.1 700,265 - GFF2975 0.11 +0.2 700,265 - GFF2975 0.11 +0.0 700,499 + GFF2975 0.65 +1.3 700,500 - GFF2975 0.65 -0.2 700,707 + +0.2 700,917 + GFF2976 0.18 +0.0 700,924 - GFF2976 0.19 +0.6 700,966 - GFF2976 0.23 -0.7 700,966 - GFF2976 0.23 -0.0 700,966 - GFF2976 0.23 +1.0 701,040 + GFF2976 0.31 +0.4 701,041 - GFF2976 0.31 -1.4 701,041 - GFF2976 0.31 +0.5 701,061 + GFF2976 0.33 -1.7 701,062 - GFF2976 0.33 +0.6 701,062 - GFF2976 0.33 -0.4 701,300 + GFF2976 0.58 -0.9 701,300 + GFF2976 0.58 +1.9 701,300 + GFF2976 0.58 -0.4 701,300 + GFF2976 0.58 -0.1 701,301 - GFF2976 0.58 -0.8 701,742 + -0.4 702,592 + GFF2978 0.19 +0.8 702,592 + GFF2978 0.19 -1.1 702,592 + GFF2978 0.19 +1.2 702,593 - GFF2978 0.19 -0.2 702,628 + GFF2978 0.23 -0.7 702,629 - GFF2978 0.23 +0.7 702,629 - GFF2978 0.23 +0.0 702,629 - GFF2978 0.23 -0.6 702,640 + GFF2978 0.24 -0.9 702,641 - GFF2978 0.24 -0.7
Or see this region's nucleotide sequence