Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2926 and GFF2927 overlap by 8 nucleotides GFF2927 and GFF2928 are separated by 4 nucleotides GFF2928 and GFF2929 are separated by 77 nucleotides
GFF2926 - Sarcosine oxidase subunit alpha, at 645,571 to 648,576
GFF2926
GFF2927 - hypothetical protein, at 648,569 to 649,126
GFF2927
GFF2928 - hypothetical protein, at 649,131 to 649,805
GFF2928
GFF2929 - hypothetical protein, at 649,883 to 651,589
GFF2929
Position (kb) 649
650 Strain fitness (log2 ratio) -1
0
1 at 648.388 kb on + strand at 648.388 kb on + strand at 648.586 kb on + strand at 649.082 kb on + strand at 649.082 kb on + strand at 649.083 kb on - strand at 649.083 kb on - strand at 649.083 kb on - strand at 649.375 kb on + strand, within GFF2928 at 649.375 kb on + strand, within GFF2928 at 649.376 kb on - strand, within GFF2928 at 649.376 kb on - strand, within GFF2928 at 649.376 kb on - strand, within GFF2928 at 649.678 kb on + strand, within GFF2928 at 649.679 kb on - strand, within GFF2928 at 649.684 kb on + strand, within GFF2928 at 649.684 kb on + strand, within GFF2928 at 649.684 kb on + strand, within GFF2928 at 649.684 kb on + strand, within GFF2928 at 649.684 kb on + strand, within GFF2928 at 649.790 kb on + strand at 649.791 kb on - strand at 649.791 kb on - strand at 649.842 kb on - strand at 649.842 kb on - strand at 649.847 kb on + strand at 649.885 kb on - strand at 650.513 kb on + strand, within GFF2929 at 650.664 kb on + strand, within GFF2929 at 650.664 kb on + strand, within GFF2929 at 650.664 kb on + strand, within GFF2929 at 650.665 kb on - strand, within GFF2929 at 650.665 kb on - strand, within GFF2929 at 650.740 kb on + strand, within GFF2929 at 650.741 kb on - strand, within GFF2929 at 650.748 kb on + strand, within GFF2929 at 650.748 kb on + strand, within GFF2929 at 650.749 kb on - strand, within GFF2929 at 650.792 kb on + strand, within GFF2929
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 648,388 + +0.0 648,388 + -0.5 648,586 + -0.5 649,082 + +0.2 649,082 + -1.6 649,083 - +0.8 649,083 - +0.6 649,083 - -0.4 649,375 + GFF2928 0.36 -0.1 649,375 + GFF2928 0.36 +0.1 649,376 - GFF2928 0.36 -0.3 649,376 - GFF2928 0.36 +0.9 649,376 - GFF2928 0.36 -0.5 649,678 + GFF2928 0.81 -0.2 649,679 - GFF2928 0.81 +0.5 649,684 + GFF2928 0.82 -0.1 649,684 + GFF2928 0.82 +0.9 649,684 + GFF2928 0.82 -0.6 649,684 + GFF2928 0.82 +0.6 649,684 + GFF2928 0.82 +0.9 649,790 + -0.2 649,791 - +0.0 649,791 - -0.3 649,842 - +0.3 649,842 - -0.3 649,847 + -0.2 649,885 - +0.1 650,513 + GFF2929 0.37 +0.3 650,664 + GFF2929 0.46 -0.4 650,664 + GFF2929 0.46 -0.4 650,664 + GFF2929 0.46 +0.3 650,665 - GFF2929 0.46 +0.5 650,665 - GFF2929 0.46 -0.6 650,740 + GFF2929 0.50 +0.4 650,741 - GFF2929 0.50 -0.2 650,748 + GFF2929 0.51 -0.4 650,748 + GFF2929 0.51 +0.3 650,749 - GFF2929 0.51 +0.8 650,792 + GFF2929 0.53 -0.1
Or see this region's nucleotide sequence