Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2920 and GFF2921 overlap by 4 nucleotides GFF2921 and GFF2922 overlap by 4 nucleotides GFF2922 and GFF2923 are separated by 13 nucleotides
GFF2920 - hypothetical protein, at 639,926 to 640,984
GFF2920
GFF2921 - hypothetical protein, at 640,981 to 641,616
GFF2921
GFF2922 - hypothetical protein, at 641,613 to 642,599
GFF2922
GFF2923 - hypothetical protein, at 642,613 to 643,668
GFF2923
Position (kb) 640
641
642 Strain fitness (log2 ratio) -1
0
1
2 at 640.104 kb on + strand, within GFF2920 at 640.104 kb on + strand, within GFF2920 at 640.149 kb on + strand, within GFF2920 at 640.149 kb on + strand, within GFF2920 at 640.149 kb on + strand, within GFF2920 at 640.149 kb on + strand, within GFF2920 at 640.150 kb on - strand, within GFF2920 at 640.150 kb on - strand, within GFF2920 at 640.549 kb on - strand, within GFF2920 at 640.749 kb on + strand, within GFF2920 at 640.750 kb on - strand, within GFF2920 at 640.750 kb on - strand, within GFF2920 at 640.750 kb on - strand, within GFF2920 at 640.750 kb on - strand, within GFF2920 at 640.979 kb on - strand at 640.979 kb on - strand at 641.078 kb on + strand, within GFF2921 at 641.078 kb on + strand, within GFF2921 at 641.078 kb on + strand, within GFF2921 at 641.078 kb on + strand, within GFF2921 at 641.079 kb on - strand, within GFF2921 at 641.298 kb on - strand, within GFF2921 at 641.298 kb on - strand, within GFF2921 at 641.298 kb on - strand, within GFF2921 at 641.375 kb on + strand, within GFF2921 at 641.376 kb on - strand, within GFF2921 at 641.376 kb on - strand, within GFF2921 at 641.376 kb on - strand, within GFF2921 at 641.376 kb on - strand, within GFF2921 at 641.812 kb on + strand, within GFF2922 at 641.812 kb on + strand, within GFF2922 at 641.812 kb on + strand, within GFF2922 at 641.813 kb on - strand, within GFF2922 at 641.813 kb on - strand, within GFF2922 at 641.918 kb on - strand, within GFF2922 at 642.425 kb on - strand, within GFF2922
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 640,104 + GFF2920 0.17 +0.2 640,104 + GFF2920 0.17 -0.3 640,149 + GFF2920 0.21 -0.2 640,149 + GFF2920 0.21 +1.0 640,149 + GFF2920 0.21 -0.1 640,149 + GFF2920 0.21 -0.1 640,150 - GFF2920 0.21 +0.5 640,150 - GFF2920 0.21 -0.2 640,549 - GFF2920 0.59 +0.5 640,749 + GFF2920 0.78 +0.8 640,750 - GFF2920 0.78 +0.8 640,750 - GFF2920 0.78 +0.3 640,750 - GFF2920 0.78 +0.7 640,750 - GFF2920 0.78 -0.3 640,979 - -1.2 640,979 - +0.5 641,078 + GFF2921 0.15 -0.7 641,078 + GFF2921 0.15 +2.7 641,078 + GFF2921 0.15 +1.5 641,078 + GFF2921 0.15 -0.2 641,079 - GFF2921 0.15 +0.2 641,298 - GFF2921 0.50 -0.7 641,298 - GFF2921 0.50 -0.1 641,298 - GFF2921 0.50 -0.1 641,375 + GFF2921 0.62 -1.0 641,376 - GFF2921 0.62 -0.2 641,376 - GFF2921 0.62 +1.0 641,376 - GFF2921 0.62 +0.6 641,376 - GFF2921 0.62 -0.6 641,812 + GFF2922 0.20 +1.3 641,812 + GFF2922 0.20 -0.2 641,812 + GFF2922 0.20 -0.4 641,813 - GFF2922 0.20 -0.4 641,813 - GFF2922 0.20 +0.6 641,918 - GFF2922 0.31 -0.2 642,425 - GFF2922 0.82 +1.1
Or see this region's nucleotide sequence