Strain Fitness in Xanthobacter sp. DMC5 around GFF290

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF288 and GFF289 are separated by 159 nucleotidesGFF289 and GFF290 are separated by 49 nucleotidesGFF290 and GFF291 are separated by 73 nucleotides GFF288 - Peptidoglycan-associated lipoprotein, at 304,015 to 304,626 GFF288 GFF289 - hypothetical protein, at 304,786 to 305,229 GFF289 GFF290 - hypothetical protein, at 305,279 to 305,764 GFF290 GFF291 - Glutamine synthetase, at 305,838 to 307,193 GFF291 Position (kb) 305 306Strain fitness (log2 ratio) -2 -1 0 1at 304.322 kb on - strand, within GFF288at 304.375 kb on + strand, within GFF288at 304.769 kb on - strandat 304.960 kb on + strand, within GFF289at 304.960 kb on + strand, within GFF289at 304.960 kb on + strand, within GFF289at 304.960 kb on + strand, within GFF289at 304.960 kb on + strand, within GFF289at 304.961 kb on - strand, within GFF289at 304.961 kb on - strand, within GFF289at 304.961 kb on - strand, within GFF289at 304.961 kb on - strand, within GFF289at 304.961 kb on - strand, within GFF289at 304.961 kb on - strand, within GFF289at 304.961 kb on - strand, within GFF289at 304.961 kb on - strand, within GFF289at 304.961 kb on - strand, within GFF289at 304.961 kb on - strand, within GFF289at 304.961 kb on - strand, within GFF289at 304.961 kb on - strand, within GFF289at 305.041 kb on + strand, within GFF289at 305.041 kb on + strand, within GFF289at 305.041 kb on + strand, within GFF289at 305.041 kb on + strand, within GFF289at 305.042 kb on - strand, within GFF289at 305.042 kb on - strand, within GFF289at 305.182 kb on + strand, within GFF289at 305.182 kb on + strand, within GFF289at 305.182 kb on + strand, within GFF289at 305.182 kb on + strand, within GFF289at 305.182 kb on + strand, within GFF289at 305.182 kb on + strand, within GFF289at 305.182 kb on + strand, within GFF289at 305.182 kb on + strand, within GFF289at 305.182 kb on + strand, within GFF289at 305.183 kb on - strand, within GFF289at 305.183 kb on - strand, within GFF289at 305.183 kb on - strand, within GFF289at 305.183 kb on - strand, within GFF289at 305.183 kb on - strand, within GFF289at 305.183 kb on - strand, within GFF289at 305.183 kb on - strand, within GFF289at 305.183 kb on - strand, within GFF289at 305.183 kb on - strand, within GFF289at 305.183 kb on - strand, within GFF289at 305.579 kb on + strand, within GFF290at 305.579 kb on + strand, within GFF290at 305.580 kb on - strand, within GFF290at 305.580 kb on - strand, within GFF290at 305.580 kb on - strand, within GFF290at 305.580 kb on - strand, within GFF290at 305.580 kb on - strand, within GFF290at 305.707 kb on + strand, within GFF290at 305.721 kb on - strandat 305.920 kb on + strandat 305.920 kb on + strandat 306.043 kb on + strand, within GFF291at 306.043 kb on + strand, within GFF291at 306.043 kb on + strand, within GFF291at 306.044 kb on - strand, within GFF291at 306.044 kb on - strand, within GFF291at 306.130 kb on + strand, within GFF291at 306.165 kb on - strand, within GFF291at 306.217 kb on + strand, within GFF291at 306.217 kb on + strand, within GFF291at 306.217 kb on + strand, within GFF291at 306.217 kb on + strand, within GFF291at 306.218 kb on - strand, within GFF291at 306.218 kb on - strand, within GFF291at 306.218 kb on - strand, within GFF291at 306.218 kb on - strand, within GFF291at 306.221 kb on + strand, within GFF291at 306.222 kb on - strand, within GFF291at 306.280 kb on + strand, within GFF291at 306.423 kb on + strand, within GFF291at 306.423 kb on + strand, within GFF291at 306.423 kb on + strand, within GFF291at 306.423 kb on + strand, within GFF291at 306.423 kb on + strand, within GFF291at 306.423 kb on + strand, within GFF291at 306.423 kb on + strand, within GFF291at 306.424 kb on - strand, within GFF291at 306.424 kb on - strand, within GFF291at 306.424 kb on - strand, within GFF291at 306.424 kb on - strand, within GFF291at 306.424 kb on - strand, within GFF291at 306.424 kb on - strand, within GFF291at 306.520 kb on + strand, within GFF291at 306.521 kb on - strand, within GFF291at 306.565 kb on + strand, within GFF291at 306.566 kb on - strand, within GFF291at 306.697 kb on + strand, within GFF291at 306.698 kb on - strand, within GFF291at 306.763 kb on + strand, within GFF291at 306.764 kb on - strand, within GFF291

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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304,322 - GFF288 0.50 -1.0
304,375 + GFF288 0.59 +0.8
304,769 - -0.3
304,960 + GFF289 0.39 -0.2
304,960 + GFF289 0.39 -0.7
304,960 + GFF289 0.39 -0.2
304,960 + GFF289 0.39 -0.7
304,960 + GFF289 0.39 +0.1
304,961 - GFF289 0.39 -0.8
304,961 - GFF289 0.39 +0.1
304,961 - GFF289 0.39 -0.1
304,961 - GFF289 0.39 -0.2
304,961 - GFF289 0.39 -0.2
304,961 - GFF289 0.39 -0.4
304,961 - GFF289 0.39 -0.6
304,961 - GFF289 0.39 -1.3
304,961 - GFF289 0.39 -0.0
304,961 - GFF289 0.39 +0.3
304,961 - GFF289 0.39 +0.8
304,961 - GFF289 0.39 +1.1
305,041 + GFF289 0.57 +0.5
305,041 + GFF289 0.57 -0.4
305,041 + GFF289 0.57 +0.8
305,041 + GFF289 0.57 -0.1
305,042 - GFF289 0.58 -0.6
305,042 - GFF289 0.58 -0.0
305,182 + GFF289 0.89 -2.4
305,182 + GFF289 0.89 -1.2
305,182 + GFF289 0.89 -0.5
305,182 + GFF289 0.89 +0.9
305,182 + GFF289 0.89 +0.9
305,182 + GFF289 0.89 +1.1
305,182 + GFF289 0.89 -0.8
305,182 + GFF289 0.89 +0.0
305,182 + GFF289 0.89 -1.4
305,183 - GFF289 0.89 -0.5
305,183 - GFF289 0.89 -0.1
305,183 - GFF289 0.89 -0.9
305,183 - GFF289 0.89 -0.7
305,183 - GFF289 0.89 +0.1
305,183 - GFF289 0.89 +0.2
305,183 - GFF289 0.89 -0.9
305,183 - GFF289 0.89 -0.5
305,183 - GFF289 0.89 +0.3
305,183 - GFF289 0.89 +0.5
305,579 + GFF290 0.62 -1.1
305,579 + GFF290 0.62 +0.7
305,580 - GFF290 0.62 +0.4
305,580 - GFF290 0.62 -0.9
305,580 - GFF290 0.62 -0.2
305,580 - GFF290 0.62 -0.2
305,580 - GFF290 0.62 +0.1
305,707 + GFF290 0.88 +0.3
305,721 - +1.1
305,920 + -2.2
305,920 + -1.4
306,043 + GFF291 0.15 +1.1
306,043 + GFF291 0.15 -0.2
306,043 + GFF291 0.15 +0.5
306,044 - GFF291 0.15 -1.2
306,044 - GFF291 0.15 -0.8
306,130 + GFF291 0.22 -0.6
306,165 - GFF291 0.24 -0.7
306,217 + GFF291 0.28 +1.2
306,217 + GFF291 0.28 +0.6
306,217 + GFF291 0.28 +0.2
306,217 + GFF291 0.28 +0.7
306,218 - GFF291 0.28 -0.1
306,218 - GFF291 0.28 +0.7
306,218 - GFF291 0.28 +0.1
306,218 - GFF291 0.28 -0.7
306,221 + GFF291 0.28 +0.3
306,222 - GFF291 0.28 +0.8
306,280 + GFF291 0.33 +1.0
306,423 + GFF291 0.43 +1.1
306,423 + GFF291 0.43 +0.2
306,423 + GFF291 0.43 -1.1
306,423 + GFF291 0.43 -0.5
306,423 + GFF291 0.43 -0.8
306,423 + GFF291 0.43 -0.8
306,423 + GFF291 0.43 +1.3
306,424 - GFF291 0.43 +1.1
306,424 - GFF291 0.43 -1.1
306,424 - GFF291 0.43 +0.2
306,424 - GFF291 0.43 +0.2
306,424 - GFF291 0.43 -0.3
306,424 - GFF291 0.43 +0.9
306,520 + GFF291 0.50 -1.8
306,521 - GFF291 0.50 -0.8
306,565 + GFF291 0.54 +0.3
306,566 - GFF291 0.54 +0.5
306,697 + GFF291 0.63 -0.5
306,698 - GFF291 0.63 +0.5
306,763 + GFF291 0.68 +0.3
306,764 - GFF291 0.68 +1.1

Or see this region's nucleotide sequence