Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2895 and GFF2896 overlap by 4 nucleotides GFF2896 and GFF2897 overlap by 4 nucleotides
GFF2895 - Caffeine dehydrogenase subunit alpha, at 609,225 to 611,582
GFF2895
GFF2896 - hypothetical protein, at 611,579 to 612,442
GFF2896
GFF2897 - Deacetylase, at 612,439 to 613,716
GFF2897
Position (kb) 611
612
613 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 610.647 kb on - strand, within GFF2895 at 610.699 kb on + strand, within GFF2895 at 610.699 kb on + strand, within GFF2895 at 610.700 kb on - strand, within GFF2895 at 610.700 kb on - strand, within GFF2895 at 610.700 kb on - strand, within GFF2895 at 610.714 kb on + strand, within GFF2895 at 610.844 kb on - strand, within GFF2895 at 610.844 kb on - strand, within GFF2895 at 610.844 kb on - strand, within GFF2895 at 611.460 kb on + strand at 611.460 kb on + strand at 611.460 kb on + strand at 611.461 kb on - strand at 611.461 kb on - strand at 611.461 kb on - strand at 611.461 kb on - strand at 611.461 kb on - strand at 611.461 kb on - strand at 612.004 kb on - strand, within GFF2896 at 612.004 kb on - strand, within GFF2896 at 612.090 kb on + strand, within GFF2896 at 612.223 kb on - strand, within GFF2896 at 612.223 kb on - strand, within GFF2896 at 612.255 kb on + strand, within GFF2896 at 612.360 kb on + strand at 612.360 kb on + strand at 612.360 kb on + strand at 612.779 kb on + strand, within GFF2897 at 612.779 kb on + strand, within GFF2897 at 612.779 kb on + strand, within GFF2897 at 612.819 kb on + strand, within GFF2897 at 612.819 kb on + strand, within GFF2897 at 612.820 kb on + strand, within GFF2897 at 612.820 kb on - strand, within GFF2897 at 612.824 kb on + strand, within GFF2897 at 612.824 kb on + strand, within GFF2897 at 612.825 kb on - strand, within GFF2897 at 612.850 kb on - strand, within GFF2897 at 612.893 kb on + strand, within GFF2897 at 612.894 kb on - strand, within GFF2897 at 613.127 kb on + strand, within GFF2897 at 613.128 kb on - strand, within GFF2897 at 613.128 kb on - strand, within GFF2897 at 613.308 kb on - strand, within GFF2897 at 613.310 kb on + strand, within GFF2897 at 613.310 kb on + strand, within GFF2897 at 613.310 kb on + strand, within GFF2897 at 613.310 kb on + strand, within GFF2897 at 613.310 kb on + strand, within GFF2897 at 613.310 kb on + strand, within GFF2897 at 613.311 kb on - strand, within GFF2897 at 613.311 kb on - strand, within GFF2897 at 613.337 kb on + strand, within GFF2897 at 613.337 kb on + strand, within GFF2897 at 613.355 kb on + strand, within GFF2897 at 613.355 kb on + strand, within GFF2897 at 613.355 kb on + strand, within GFF2897 at 613.356 kb on - strand, within GFF2897
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 610,647 - GFF2895 0.60 +0.2 610,699 + GFF2895 0.63 +0.7 610,699 + GFF2895 0.63 +0.9 610,700 - GFF2895 0.63 +0.3 610,700 - GFF2895 0.63 +0.2 610,700 - GFF2895 0.63 +0.2 610,714 + GFF2895 0.63 -1.7 610,844 - GFF2895 0.69 -0.1 610,844 - GFF2895 0.69 -1.8 610,844 - GFF2895 0.69 +0.5 611,460 + +0.0 611,460 + +0.3 611,460 + -0.1 611,461 - +0.1 611,461 - +1.2 611,461 - -0.4 611,461 - +1.4 611,461 - +0.8 611,461 - -0.0 612,004 - GFF2896 0.49 -1.9 612,004 - GFF2896 0.49 -0.1 612,090 + GFF2896 0.59 -0.2 612,223 - GFF2896 0.75 +0.6 612,223 - GFF2896 0.75 -0.7 612,255 + GFF2896 0.78 -0.1 612,360 + +0.5 612,360 + +0.8 612,360 + -0.9 612,779 + GFF2897 0.27 +0.5 612,779 + GFF2897 0.27 -0.4 612,779 + GFF2897 0.27 +0.4 612,819 + GFF2897 0.30 +0.4 612,819 + GFF2897 0.30 +0.5 612,820 + GFF2897 0.30 -1.0 612,820 - GFF2897 0.30 +0.4 612,824 + GFF2897 0.30 -1.0 612,824 + GFF2897 0.30 -0.5 612,825 - GFF2897 0.30 +0.2 612,850 - GFF2897 0.32 +0.0 612,893 + GFF2897 0.36 +0.6 612,894 - GFF2897 0.36 +0.3 613,127 + GFF2897 0.54 +0.2 613,128 - GFF2897 0.54 +0.5 613,128 - GFF2897 0.54 +0.0 613,308 - GFF2897 0.68 +0.7 613,310 + GFF2897 0.68 -1.0 613,310 + GFF2897 0.68 -1.3 613,310 + GFF2897 0.68 -1.1 613,310 + GFF2897 0.68 +0.0 613,310 + GFF2897 0.68 -0.8 613,310 + GFF2897 0.68 +0.8 613,311 - GFF2897 0.68 +0.1 613,311 - GFF2897 0.68 +1.0 613,337 + GFF2897 0.70 +0.0 613,337 + GFF2897 0.70 -1.2 613,355 + GFF2897 0.72 +0.6 613,355 + GFF2897 0.72 -0.9 613,355 + GFF2897 0.72 -3.3 613,356 - GFF2897 0.72 -0.3
Or see this region's nucleotide sequence