Strain Fitness in Xanthobacter sp. DMC5 around GFF2815

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2814 and GFF2815 are separated by 175 nucleotidesGFF2815 and GFF2816 are separated by 9 nucleotidesGFF2816 and GFF2817 are separated by 209 nucleotides GFF2814 - Acyl-CoA dehydrogenase, at 522,956 to 524,128 GFF2814 GFF2815 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 524,304 to 525,086 GFF2815 GFF2816 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 525,096 to 525,866 GFF2816 GFF2817 - hypothetical protein, at 526,076 to 526,642 GFF2817 Position (kb) 524 525 526Strain fitness (log2 ratio) -2 -1 0 1 2at 523.323 kb on + strand, within GFF2814at 523.323 kb on + strand, within GFF2814at 523.323 kb on + strand, within GFF2814at 523.323 kb on + strand, within GFF2814at 523.323 kb on + strand, within GFF2814at 523.323 kb on + strand, within GFF2814at 523.323 kb on + strand, within GFF2814at 523.323 kb on + strand, within GFF2814at 523.324 kb on - strand, within GFF2814at 523.324 kb on - strand, within GFF2814at 523.324 kb on - strand, within GFF2814at 523.671 kb on + strand, within GFF2814at 523.671 kb on + strand, within GFF2814at 523.671 kb on + strand, within GFF2814at 523.671 kb on + strand, within GFF2814at 523.672 kb on - strand, within GFF2814at 523.672 kb on - strand, within GFF2814at 523.672 kb on - strand, within GFF2814at 523.672 kb on - strand, within GFF2814at 523.858 kb on - strand, within GFF2814at 523.858 kb on - strand, within GFF2814at 523.858 kb on - strand, within GFF2814at 523.908 kb on + strand, within GFF2814at 523.908 kb on + strand, within GFF2814at 524.112 kb on + strandat 524.112 kb on + strandat 524.113 kb on - strandat 524.306 kb on - strandat 524.306 kb on - strandat 524.306 kb on - strandat 524.306 kb on - strandat 524.306 kb on - strandat 524.383 kb on + strand, within GFF2815at 524.383 kb on + strand, within GFF2815at 524.383 kb on + strand, within GFF2815at 524.384 kb on - strand, within GFF2815at 524.384 kb on - strand, within GFF2815at 524.384 kb on - strand, within GFF2815at 524.386 kb on + strand, within GFF2815at 524.386 kb on + strand, within GFF2815at 524.387 kb on - strand, within GFF2815at 524.387 kb on - strand, within GFF2815at 524.587 kb on + strand, within GFF2815at 524.587 kb on + strand, within GFF2815at 524.587 kb on + strand, within GFF2815at 524.602 kb on + strand, within GFF2815at 524.602 kb on + strand, within GFF2815at 524.647 kb on + strand, within GFF2815at 524.647 kb on + strand, within GFF2815at 524.648 kb on - strand, within GFF2815at 524.648 kb on - strand, within GFF2815at 524.864 kb on - strand, within GFF2815at 524.864 kb on - strand, within GFF2815at 524.864 kb on - strand, within GFF2815at 525.013 kb on + strandat 525.013 kb on + strandat 525.013 kb on + strandat 525.014 kb on - strandat 525.014 kb on - strandat 525.014 kb on - strandat 525.072 kb on - strandat 525.077 kb on + strandat 525.078 kb on - strandat 525.078 kb on - strandat 525.079 kb on + strandat 525.079 kb on + strandat 525.079 kb on + strandat 525.079 kb on + strandat 525.079 kb on + strandat 525.242 kb on + strand, within GFF2816at 525.243 kb on - strand, within GFF2816at 525.243 kb on - strand, within GFF2816at 525.400 kb on + strand, within GFF2816at 525.401 kb on - strand, within GFF2816at 525.667 kb on + strand, within GFF2816at 525.667 kb on + strand, within GFF2816at 525.668 kb on - strand, within GFF2816at 525.668 kb on - strand, within GFF2816at 525.834 kb on + strandat 525.835 kb on - strandat 525.930 kb on + strandat 525.931 kb on - strandat 525.931 kb on - strandat 525.931 kb on - strandat 525.941 kb on + strandat 525.942 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
523,323 + GFF2814 0.31 +1.4
523,323 + GFF2814 0.31 -0.4
523,323 + GFF2814 0.31 -0.7
523,323 + GFF2814 0.31 +0.5
523,323 + GFF2814 0.31 +1.3
523,323 + GFF2814 0.31 +0.6
523,323 + GFF2814 0.31 -0.2
523,323 + GFF2814 0.31 +1.0
523,324 - GFF2814 0.31 -0.8
523,324 - GFF2814 0.31 -2.0
523,324 - GFF2814 0.31 -1.1
523,671 + GFF2814 0.61 -0.8
523,671 + GFF2814 0.61 +0.6
523,671 + GFF2814 0.61 +1.7
523,671 + GFF2814 0.61 +1.0
523,672 - GFF2814 0.61 +0.5
523,672 - GFF2814 0.61 -0.4
523,672 - GFF2814 0.61 +0.9
523,672 - GFF2814 0.61 +0.2
523,858 - GFF2814 0.77 +0.9
523,858 - GFF2814 0.77 -0.4
523,858 - GFF2814 0.77 +0.2
523,908 + GFF2814 0.81 -0.6
523,908 + GFF2814 0.81 -1.1
524,112 + -1.8
524,112 + -1.8
524,113 - -0.2
524,306 - -0.3
524,306 - +0.5
524,306 - -0.4
524,306 - -0.2
524,306 - -0.8
524,383 + GFF2815 0.10 -0.6
524,383 + GFF2815 0.10 +0.1
524,383 + GFF2815 0.10 -0.4
524,384 - GFF2815 0.10 +0.3
524,384 - GFF2815 0.10 +0.8
524,384 - GFF2815 0.10 +0.9
524,386 + GFF2815 0.10 +0.5
524,386 + GFF2815 0.10 +0.6
524,387 - GFF2815 0.11 +0.3
524,387 - GFF2815 0.11 +1.0
524,587 + GFF2815 0.36 +0.1
524,587 + GFF2815 0.36 +0.0
524,587 + GFF2815 0.36 -0.6
524,602 + GFF2815 0.38 -1.1
524,602 + GFF2815 0.38 +0.5
524,647 + GFF2815 0.44 -0.9
524,647 + GFF2815 0.44 -0.7
524,648 - GFF2815 0.44 +0.5
524,648 - GFF2815 0.44 -0.8
524,864 - GFF2815 0.72 +0.3
524,864 - GFF2815 0.72 +0.3
524,864 - GFF2815 0.72 -0.1
525,013 + -0.1
525,013 + -0.7
525,013 + -0.2
525,014 - +0.4
525,014 - +1.2
525,014 - +0.7
525,072 - -0.1
525,077 + -0.5
525,078 - -0.7
525,078 - +0.1
525,079 + +1.5
525,079 + +0.2
525,079 + +0.6
525,079 + +1.9
525,079 + -0.3
525,242 + GFF2816 0.19 +0.1
525,243 - GFF2816 0.19 -1.0
525,243 - GFF2816 0.19 -1.1
525,400 + GFF2816 0.39 -0.7
525,401 - GFF2816 0.40 +0.8
525,667 + GFF2816 0.74 -0.5
525,667 + GFF2816 0.74 -0.1
525,668 - GFF2816 0.74 -1.0
525,668 - GFF2816 0.74 -0.8
525,834 + +0.1
525,835 - -0.6
525,930 + -0.8
525,931 - +1.5
525,931 - -0.4
525,931 - +1.8
525,941 + -0.2
525,942 - -0.5

Or see this region's nucleotide sequence