Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2800 and GFF2801 overlap by 4 nucleotides GFF2801 and GFF2802 are separated by 22 nucleotides GFF2802 and GFF2803 are separated by 22 nucleotides GFF2803 and GFF2804 are separated by 60 nucleotides
GFF2800 - Putative metabolite transport protein YjhB, at 506,035 to 507,294
GFF2800
GFF2801 - Kynurenine formamidase, at 507,291 to 508,130
GFF2801
GFF2802 - 2-oxo-hept-4-ene-1,7-dioate hydratase, at 508,153 to 508,935
GFF2802
GFF2803 - 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase, at 508,958 to 509,719
GFF2803
GFF2804 - hypothetical protein, at 509,780 to 510,079
GFF2804
Position (kb) 508
509 Strain fitness (log2 ratio) -2
-1
0
1
2 at 507.190 kb on + strand at 507.190 kb on + strand at 507.230 kb on - strand at 507.576 kb on + strand, within GFF2801 at 507.576 kb on + strand, within GFF2801 at 507.577 kb on - strand, within GFF2801 at 507.577 kb on - strand, within GFF2801 at 507.811 kb on - strand, within GFF2801 at 507.811 kb on - strand, within GFF2801 at 507.831 kb on + strand, within GFF2801 at 507.832 kb on - strand, within GFF2801 at 507.923 kb on + strand, within GFF2801 at 508.162 kb on + strand at 508.256 kb on - strand, within GFF2802 at 508.271 kb on - strand, within GFF2802 at 508.390 kb on + strand, within GFF2802 at 508.390 kb on + strand, within GFF2802 at 508.525 kb on + strand, within GFF2802 at 508.525 kb on + strand, within GFF2802 at 508.526 kb on - strand, within GFF2802 at 508.526 kb on - strand, within GFF2802 at 508.526 kb on - strand, within GFF2802 at 508.526 kb on - strand, within GFF2802 at 509.042 kb on + strand, within GFF2803 at 509.042 kb on + strand, within GFF2803 at 509.043 kb on - strand, within GFF2803 at 509.043 kb on - strand, within GFF2803 at 509.043 kb on - strand, within GFF2803 at 509.073 kb on - strand, within GFF2803 at 509.154 kb on - strand, within GFF2803 at 509.246 kb on + strand, within GFF2803 at 509.246 kb on + strand, within GFF2803 at 509.247 kb on - strand, within GFF2803 at 509.247 kb on - strand, within GFF2803 at 509.294 kb on + strand, within GFF2803 at 509.363 kb on + strand, within GFF2803 at 509.363 kb on + strand, within GFF2803 at 509.363 kb on + strand, within GFF2803 at 509.363 kb on + strand, within GFF2803 at 509.472 kb on - strand, within GFF2803 at 509.771 kb on + strand at 509.772 kb on - strand at 509.784 kb on + strand at 509.784 kb on + strand at 509.784 kb on + strand at 509.784 kb on + strand at 509.785 kb on - strand at 509.785 kb on - strand at 509.785 kb on - strand at 509.850 kb on + strand, within GFF2804 at 509.850 kb on + strand, within GFF2804 at 509.850 kb on + strand, within GFF2804 at 509.850 kb on + strand, within GFF2804 at 509.851 kb on - strand, within GFF2804 at 509.851 kb on - strand, within GFF2804 at 509.880 kb on + strand, within GFF2804 at 509.881 kb on - strand, within GFF2804 at 509.881 kb on - strand, within GFF2804 at 509.881 kb on - strand, within GFF2804
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 507,190 + -0.4 507,190 + +0.9 507,230 - +0.3 507,576 + GFF2801 0.34 -0.6 507,576 + GFF2801 0.34 -0.0 507,577 - GFF2801 0.34 -0.0 507,577 - GFF2801 0.34 +0.5 507,811 - GFF2801 0.62 +0.1 507,811 - GFF2801 0.62 -0.4 507,831 + GFF2801 0.64 -1.4 507,832 - GFF2801 0.64 -1.6 507,923 + GFF2801 0.75 +0.1 508,162 + -0.5 508,256 - GFF2802 0.13 +1.1 508,271 - GFF2802 0.15 +0.8 508,390 + GFF2802 0.30 +0.5 508,390 + GFF2802 0.30 -0.3 508,525 + GFF2802 0.48 +0.5 508,525 + GFF2802 0.48 +0.4 508,526 - GFF2802 0.48 +1.2 508,526 - GFF2802 0.48 -0.0 508,526 - GFF2802 0.48 -0.3 508,526 - GFF2802 0.48 +1.6 509,042 + GFF2803 0.11 -0.1 509,042 + GFF2803 0.11 -1.3 509,043 - GFF2803 0.11 -0.4 509,043 - GFF2803 0.11 -0.8 509,043 - GFF2803 0.11 +2.2 509,073 - GFF2803 0.15 +0.1 509,154 - GFF2803 0.26 -0.1 509,246 + GFF2803 0.38 -0.1 509,246 + GFF2803 0.38 +0.6 509,247 - GFF2803 0.38 +0.2 509,247 - GFF2803 0.38 +0.3 509,294 + GFF2803 0.44 -0.9 509,363 + GFF2803 0.53 +0.2 509,363 + GFF2803 0.53 +0.8 509,363 + GFF2803 0.53 -0.0 509,363 + GFF2803 0.53 -1.1 509,472 - GFF2803 0.67 +0.3 509,771 + -2.3 509,772 - -0.1 509,784 + +0.6 509,784 + -0.4 509,784 + +0.0 509,784 + +0.4 509,785 - +0.7 509,785 - +0.4 509,785 - +0.1 509,850 + GFF2804 0.23 -0.3 509,850 + GFF2804 0.23 +0.9 509,850 + GFF2804 0.23 +0.1 509,850 + GFF2804 0.23 -0.8 509,851 - GFF2804 0.24 -0.1 509,851 - GFF2804 0.24 +0.3 509,880 + GFF2804 0.33 +0.3 509,881 - GFF2804 0.34 +0.2 509,881 - GFF2804 0.34 +0.4 509,881 - GFF2804 0.34 +0.4
Or see this region's nucleotide sequence