Strain Fitness in Xanthobacter sp. DMC5 around GFF2775

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2774 and GFF2775 are separated by 165 nucleotidesGFF2775 and GFF2776 are separated by 469 nucleotides GFF2774 - Putative 3-oxopropanoate dehydrogenase, at 476,347 to 477,846 GFF2774 GFF2775 - hypothetical protein, at 478,012 to 479,229 GFF2775 GFF2776 - Nitrilase, at 479,699 to 480,643 GFF2776 Position (kb) 478 479 480Strain fitness (log2 ratio) -2 -1 0 1 2at 477.040 kb on + strand, within GFF2774at 477.040 kb on + strand, within GFF2774at 477.040 kb on + strand, within GFF2774at 477.041 kb on - strand, within GFF2774at 477.041 kb on - strand, within GFF2774at 477.041 kb on - strand, within GFF2774at 477.041 kb on - strand, within GFF2774at 477.041 kb on - strand, within GFF2774at 477.041 kb on - strand, within GFF2774at 477.041 kb on - strand, within GFF2774at 477.046 kb on + strand, within GFF2774at 477.046 kb on + strand, within GFF2774at 477.046 kb on + strand, within GFF2774at 477.046 kb on + strand, within GFF2774at 477.047 kb on - strand, within GFF2774at 477.047 kb on - strand, within GFF2774at 477.069 kb on + strand, within GFF2774at 477.069 kb on + strand, within GFF2774at 477.070 kb on - strand, within GFF2774at 477.070 kb on - strand, within GFF2774at 477.085 kb on + strand, within GFF2774at 477.086 kb on - strand, within GFF2774at 477.086 kb on - strand, within GFF2774at 477.086 kb on - strand, within GFF2774at 477.166 kb on + strand, within GFF2774at 477.166 kb on + strand, within GFF2774at 477.166 kb on + strand, within GFF2774at 477.166 kb on + strand, within GFF2774at 477.167 kb on - strand, within GFF2774at 477.167 kb on - strand, within GFF2774at 477.167 kb on - strand, within GFF2774at 477.286 kb on + strand, within GFF2774at 477.286 kb on + strand, within GFF2774at 477.286 kb on + strand, within GFF2774at 477.286 kb on + strand, within GFF2774at 477.287 kb on - strand, within GFF2774at 477.287 kb on - strand, within GFF2774at 477.287 kb on - strand, within GFF2774at 477.287 kb on - strand, within GFF2774at 477.431 kb on - strand, within GFF2774at 477.431 kb on - strand, within GFF2774at 477.431 kb on - strand, within GFF2774at 477.431 kb on - strand, within GFF2774at 477.431 kb on - strand, within GFF2774at 477.431 kb on - strand, within GFF2774at 477.431 kb on - strand, within GFF2774at 477.454 kb on - strand, within GFF2774at 477.454 kb on - strand, within GFF2774at 477.565 kb on + strand, within GFF2774at 477.619 kb on + strand, within GFF2774at 477.619 kb on + strand, within GFF2774at 477.619 kb on + strand, within GFF2774at 477.619 kb on + strand, within GFF2774at 477.620 kb on - strand, within GFF2774at 477.754 kb on + strandat 477.754 kb on + strandat 477.755 kb on - strandat 477.980 kb on + strandat 477.980 kb on + strandat 477.981 kb on - strandat 477.981 kb on - strandat 477.991 kb on - strandat 478.020 kb on + strandat 478.020 kb on + strandat 478.020 kb on + strandat 478.126 kb on + strandat 478.126 kb on + strandat 478.450 kb on + strand, within GFF2775at 478.450 kb on + strand, within GFF2775at 478.525 kb on + strand, within GFF2775at 478.525 kb on + strand, within GFF2775at 478.526 kb on - strand, within GFF2775at 478.526 kb on - strand, within GFF2775at 478.840 kb on + strand, within GFF2775at 478.841 kb on - strand, within GFF2775at 478.851 kb on + strand, within GFF2775at 478.851 kb on + strand, within GFF2775at 478.930 kb on + strand, within GFF2775at 478.930 kb on + strand, within GFF2775at 478.931 kb on - strand, within GFF2775at 478.948 kb on + strand, within GFF2775at 478.949 kb on - strand, within GFF2775at 478.949 kb on - strand, within GFF2775at 479.032 kb on + strand, within GFF2775at 479.032 kb on + strand, within GFF2775at 479.032 kb on + strand, within GFF2775at 479.032 kb on + strand, within GFF2775at 479.033 kb on - strand, within GFF2775at 479.033 kb on - strand, within GFF2775at 479.033 kb on - strand, within GFF2775at 479.033 kb on - strand, within GFF2775at 479.083 kb on + strand, within GFF2775at 479.084 kb on - strand, within GFF2775at 479.084 kb on - strand, within GFF2775at 479.084 kb on - strand, within GFF2775at 479.084 kb on - strand, within GFF2775at 479.084 kb on - strand, within GFF2775at 479.084 kb on - strand, within GFF2775at 479.131 kb on + strandat 479.131 kb on + strandat 479.227 kb on + strandat 479.227 kb on + strandat 479.228 kb on - strandat 479.243 kb on - strandat 479.401 kb on + strandat 479.402 kb on - strandat 479.485 kb on + strandat 479.662 kb on + strandat 479.700 kb on + strandat 479.701 kb on - strandat 479.784 kb on + strandat 479.785 kb on - strandat 479.785 kb on - strandat 479.785 kb on - strandat 479.785 kb on - strandat 479.785 kb on - strandat 479.785 kb on - strandat 479.937 kb on - strand, within GFF2776at 479.956 kb on + strand, within GFF2776at 479.956 kb on + strand, within GFF2776at 479.956 kb on + strand, within GFF2776at 479.966 kb on - strand, within GFF2776at 479.992 kb on + strand, within GFF2776at 479.992 kb on + strand, within GFF2776at 479.992 kb on + strand, within GFF2776at 479.992 kb on + strand, within GFF2776at 479.992 kb on + strand, within GFF2776at 479.992 kb on + strand, within GFF2776at 479.993 kb on - strand, within GFF2776at 479.993 kb on - strand, within GFF2776at 479.993 kb on - strand, within GFF2776at 479.993 kb on - strand, within GFF2776at 479.993 kb on - strand, within GFF2776at 479.993 kb on - strand, within GFF2776at 479.993 kb on - strand, within GFF2776at 479.993 kb on - strand, within GFF2776at 479.993 kb on - strand, within GFF2776at 479.993 kb on - strand, within GFF2776at 479.993 kb on - strand, within GFF2776at 479.994 kb on + strand, within GFF2776at 479.994 kb on + strand, within GFF2776at 479.994 kb on + strand, within GFF2776at 479.994 kb on + strand, within GFF2776at 479.994 kb on + strand, within GFF2776at 479.994 kb on + strand, within GFF2776at 479.995 kb on - strand, within GFF2776at 479.995 kb on - strand, within GFF2776at 479.995 kb on - strand, within GFF2776at 480.090 kb on + strand, within GFF2776at 480.090 kb on + strand, within GFF2776at 480.090 kb on + strand, within GFF2776at 480.091 kb on - strand, within GFF2776at 480.091 kb on - strand, within GFF2776at 480.111 kb on + strand, within GFF2776at 480.111 kb on + strand, within GFF2776at 480.111 kb on + strand, within GFF2776at 480.111 kb on + strand, within GFF2776at 480.111 kb on + strand, within GFF2776at 480.111 kb on + strand, within GFF2776at 480.112 kb on - strand, within GFF2776at 480.112 kb on - strand, within GFF2776at 480.112 kb on - strand, within GFF2776at 480.112 kb on - strand, within GFF2776at 480.112 kb on - strand, within GFF2776at 480.138 kb on + strand, within GFF2776at 480.139 kb on - strand, within GFF2776at 480.139 kb on - strand, within GFF2776at 480.139 kb on - strand, within GFF2776at 480.139 kb on - strand, within GFF2776at 480.139 kb on - strand, within GFF2776at 480.182 kb on - strand, within GFF2776

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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477,040 + GFF2774 0.46 +0.2
477,040 + GFF2774 0.46 +0.3
477,040 + GFF2774 0.46 +0.7
477,041 - GFF2774 0.46 +0.5
477,041 - GFF2774 0.46 -1.7
477,041 - GFF2774 0.46 +0.6
477,041 - GFF2774 0.46 +0.7
477,041 - GFF2774 0.46 -0.1
477,041 - GFF2774 0.46 -0.6
477,041 - GFF2774 0.46 +0.6
477,046 + GFF2774 0.47 -0.9
477,046 + GFF2774 0.47 -2.5
477,046 + GFF2774 0.47 -0.4
477,046 + GFF2774 0.47 -2.1
477,047 - GFF2774 0.47 -0.1
477,047 - GFF2774 0.47 +0.3
477,069 + GFF2774 0.48 +0.3
477,069 + GFF2774 0.48 -0.5
477,070 - GFF2774 0.48 +0.4
477,070 - GFF2774 0.48 -1.0
477,085 + GFF2774 0.49 -0.8
477,086 - GFF2774 0.49 +0.7
477,086 - GFF2774 0.49 +1.0
477,086 - GFF2774 0.49 +0.3
477,166 + GFF2774 0.55 -0.7
477,166 + GFF2774 0.55 -0.5
477,166 + GFF2774 0.55 +0.7
477,166 + GFF2774 0.55 +0.5
477,167 - GFF2774 0.55 -1.1
477,167 - GFF2774 0.55 +0.3
477,167 - GFF2774 0.55 +0.4
477,286 + GFF2774 0.63 -0.6
477,286 + GFF2774 0.63 -0.5
477,286 + GFF2774 0.63 -0.6
477,286 + GFF2774 0.63 +0.8
477,287 - GFF2774 0.63 -0.1
477,287 - GFF2774 0.63 +0.6
477,287 - GFF2774 0.63 -0.0
477,287 - GFF2774 0.63 -0.3
477,431 - GFF2774 0.72 +0.4
477,431 - GFF2774 0.72 +0.1
477,431 - GFF2774 0.72 -0.1
477,431 - GFF2774 0.72 +0.1
477,431 - GFF2774 0.72 -0.1
477,431 - GFF2774 0.72 -0.3
477,431 - GFF2774 0.72 +0.1
477,454 - GFF2774 0.74 +0.0
477,454 - GFF2774 0.74 +0.3
477,565 + GFF2774 0.81 -0.6
477,619 + GFF2774 0.85 +0.0
477,619 + GFF2774 0.85 +0.1
477,619 + GFF2774 0.85 -0.5
477,619 + GFF2774 0.85 +1.1
477,620 - GFF2774 0.85 -0.7
477,754 + -0.9
477,754 + +0.1
477,755 - -0.8
477,980 + -1.3
477,980 + +0.5
477,981 - -1.1
477,981 - +0.1
477,991 - +0.5
478,020 + -0.9
478,020 + -0.2
478,020 + -0.5
478,126 + -0.3
478,126 + +0.3
478,450 + GFF2775 0.36 +0.8
478,450 + GFF2775 0.36 -0.7
478,525 + GFF2775 0.42 +0.4
478,525 + GFF2775 0.42 -0.5
478,526 - GFF2775 0.42 +0.3
478,526 - GFF2775 0.42 -0.3
478,840 + GFF2775 0.68 -0.8
478,841 - GFF2775 0.68 -1.1
478,851 + GFF2775 0.69 +0.0
478,851 + GFF2775 0.69 +0.1
478,930 + GFF2775 0.75 +0.4
478,930 + GFF2775 0.75 -0.8
478,931 - GFF2775 0.75 -0.4
478,948 + GFF2775 0.77 -1.8
478,949 - GFF2775 0.77 -0.7
478,949 - GFF2775 0.77 +1.4
479,032 + GFF2775 0.84 +0.7
479,032 + GFF2775 0.84 -1.5
479,032 + GFF2775 0.84 -2.1
479,032 + GFF2775 0.84 +0.5
479,033 - GFF2775 0.84 +1.6
479,033 - GFF2775 0.84 +0.7
479,033 - GFF2775 0.84 +1.4
479,033 - GFF2775 0.84 +0.1
479,083 + GFF2775 0.88 -0.1
479,084 - GFF2775 0.88 +0.3
479,084 - GFF2775 0.88 -0.0
479,084 - GFF2775 0.88 -0.2
479,084 - GFF2775 0.88 -0.4
479,084 - GFF2775 0.88 +0.2
479,084 - GFF2775 0.88 +0.1
479,131 + -1.2
479,131 + +0.5
479,227 + +1.0
479,227 + +0.2
479,228 - +0.8
479,243 - +0.6
479,401 + -0.4
479,402 - +0.4
479,485 + -0.9
479,662 + -0.2
479,700 + -0.4
479,701 - -0.3
479,784 + -0.2
479,785 - -1.5
479,785 - +0.3
479,785 - -0.4
479,785 - -0.5
479,785 - -0.1
479,785 - +1.3
479,937 - GFF2776 0.25 -0.3
479,956 + GFF2776 0.27 -0.6
479,956 + GFF2776 0.27 +1.0
479,956 + GFF2776 0.27 -1.1
479,966 - GFF2776 0.28 +0.9
479,992 + GFF2776 0.31 +0.8
479,992 + GFF2776 0.31 +0.1
479,992 + GFF2776 0.31 -0.0
479,992 + GFF2776 0.31 +2.1
479,992 + GFF2776 0.31 -0.5
479,992 + GFF2776 0.31 +0.2
479,993 - GFF2776 0.31 -0.1
479,993 - GFF2776 0.31 +0.5
479,993 - GFF2776 0.31 +1.4
479,993 - GFF2776 0.31 +0.8
479,993 - GFF2776 0.31 +0.9
479,993 - GFF2776 0.31 -1.5
479,993 - GFF2776 0.31 +0.9
479,993 - GFF2776 0.31 -0.8
479,993 - GFF2776 0.31 +0.3
479,993 - GFF2776 0.31 +0.8
479,993 - GFF2776 0.31 -0.4
479,994 + GFF2776 0.31 -2.1
479,994 + GFF2776 0.31 +0.6
479,994 + GFF2776 0.31 -0.0
479,994 + GFF2776 0.31 +2.0
479,994 + GFF2776 0.31 +0.4
479,994 + GFF2776 0.31 -0.5
479,995 - GFF2776 0.31 -1.2
479,995 - GFF2776 0.31 -1.1
479,995 - GFF2776 0.31 -1.5
480,090 + GFF2776 0.41 +0.5
480,090 + GFF2776 0.41 -0.7
480,090 + GFF2776 0.41 +0.1
480,091 - GFF2776 0.41 -0.5
480,091 - GFF2776 0.41 +0.1
480,111 + GFF2776 0.44 -1.4
480,111 + GFF2776 0.44 +0.0
480,111 + GFF2776 0.44 -0.2
480,111 + GFF2776 0.44 -0.0
480,111 + GFF2776 0.44 +0.0
480,111 + GFF2776 0.44 +1.1
480,112 - GFF2776 0.44 -1.3
480,112 - GFF2776 0.44 -0.5
480,112 - GFF2776 0.44 +1.2
480,112 - GFF2776 0.44 -0.3
480,112 - GFF2776 0.44 -0.0
480,138 + GFF2776 0.46 -1.0
480,139 - GFF2776 0.47 -0.3
480,139 - GFF2776 0.47 +1.2
480,139 - GFF2776 0.47 -1.1
480,139 - GFF2776 0.47 -0.3
480,139 - GFF2776 0.47 -0.2
480,182 - GFF2776 0.51 +0.5

Or see this region's nucleotide sequence