Strain Fitness in Xanthobacter sp. DMC5 around GFF2736

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2734 and GFF2735 are separated by 19 nucleotidesGFF2735 and GFF2736 are separated by 120 nucleotidesGFF2736 and GFF2737 are separated by 73 nucleotides GFF2734 - Glutathionyl-hydroquinone reductase PcpF, at 428,847 to 429,797 GFF2734 GFF2735 - hypothetical protein, at 429,817 to 430,452 GFF2735 GFF2736 - Antibiotic efflux pump outer membrane protein ArpC, at 430,573 to 432,108 GFF2736 GFF2737 - Multidrug resistance protein MdtE, at 432,182 to 433,303 GFF2737 Position (kb) 430 431 432 433Strain fitness (log2 ratio) -2 -1 0 1at 429.585 kb on + strand, within GFF2734at 429.585 kb on + strand, within GFF2734at 429.628 kb on - strand, within GFF2734at 429.645 kb on + strand, within GFF2734at 429.646 kb on - strand, within GFF2734at 429.646 kb on - strand, within GFF2734at 429.661 kb on - strand, within GFF2734at 429.661 kb on - strand, within GFF2734at 429.661 kb on - strand, within GFF2734at 429.661 kb on - strand, within GFF2734at 429.714 kb on + strandat 429.714 kb on + strandat 429.714 kb on + strandat 429.715 kb on - strandat 429.715 kb on - strandat 429.715 kb on - strandat 429.717 kb on + strandat 429.717 kb on + strandat 429.717 kb on + strandat 429.718 kb on - strandat 429.827 kb on + strandat 429.828 kb on - strandat 429.828 kb on - strandat 430.010 kb on + strand, within GFF2735at 430.010 kb on + strand, within GFF2735at 430.010 kb on + strand, within GFF2735at 430.010 kb on + strand, within GFF2735at 430.011 kb on - strand, within GFF2735at 430.011 kb on - strand, within GFF2735at 430.011 kb on - strand, within GFF2735at 430.052 kb on + strand, within GFF2735at 430.052 kb on + strand, within GFF2735at 430.145 kb on + strand, within GFF2735at 430.146 kb on - strand, within GFF2735at 430.205 kb on + strand, within GFF2735at 430.206 kb on - strand, within GFF2735at 430.206 kb on - strand, within GFF2735at 430.283 kb on + strand, within GFF2735at 430.283 kb on + strand, within GFF2735at 430.283 kb on + strand, within GFF2735at 430.344 kb on - strand, within GFF2735at 430.464 kb on - strandat 430.503 kb on + strandat 430.503 kb on + strandat 430.513 kb on + strandat 430.554 kb on + strandat 430.569 kb on - strandat 430.569 kb on - strandat 430.569 kb on - strandat 430.572 kb on + strandat 430.572 kb on + strandat 430.573 kb on - strandat 430.573 kb on - strandat 430.573 kb on - strandat 431.023 kb on + strand, within GFF2736at 431.023 kb on + strand, within GFF2736at 431.024 kb on - strand, within GFF2736at 431.032 kb on + strand, within GFF2736at 431.033 kb on - strand, within GFF2736at 431.056 kb on + strand, within GFF2736at 431.056 kb on + strand, within GFF2736at 431.056 kb on + strand, within GFF2736at 431.057 kb on - strand, within GFF2736at 431.057 kb on - strand, within GFF2736at 431.057 kb on - strand, within GFF2736at 431.057 kb on - strand, within GFF2736at 431.057 kb on - strand, within GFF2736at 431.057 kb on - strand, within GFF2736at 431.057 kb on - strand, within GFF2736at 431.119 kb on + strand, within GFF2736at 431.119 kb on + strand, within GFF2736at 431.146 kb on + strand, within GFF2736at 431.146 kb on + strand, within GFF2736at 431.147 kb on - strand, within GFF2736at 431.147 kb on - strand, within GFF2736at 431.147 kb on - strand, within GFF2736at 431.395 kb on + strand, within GFF2736at 431.395 kb on + strand, within GFF2736at 431.395 kb on + strand, within GFF2736at 431.396 kb on - strand, within GFF2736at 431.396 kb on - strand, within GFF2736at 431.396 kb on - strand, within GFF2736at 431.396 kb on - strand, within GFF2736at 431.605 kb on + strand, within GFF2736at 431.605 kb on + strand, within GFF2736at 431.605 kb on + strand, within GFF2736at 431.606 kb on - strand, within GFF2736at 431.606 kb on - strand, within GFF2736at 431.606 kb on - strand, within GFF2736at 431.606 kb on - strand, within GFF2736at 431.710 kb on + strand, within GFF2736at 431.710 kb on + strand, within GFF2736at 431.710 kb on + strand, within GFF2736at 431.711 kb on - strand, within GFF2736at 431.711 kb on - strand, within GFF2736at 431.711 kb on - strand, within GFF2736at 431.761 kb on + strand, within GFF2736at 431.761 kb on + strand, within GFF2736at 431.762 kb on - strand, within GFF2736at 431.854 kb on + strand, within GFF2736at 431.855 kb on - strand, within GFF2736at 431.920 kb on + strand, within GFF2736at 431.920 kb on + strand, within GFF2736at 431.920 kb on + strand, within GFF2736at 431.920 kb on + strand, within GFF2736at 431.920 kb on + strand, within GFF2736at 431.921 kb on - strand, within GFF2736at 432.239 kb on + strandat 432.328 kb on + strand, within GFF2737at 432.329 kb on - strand, within GFF2737at 432.334 kb on + strand, within GFF2737at 432.334 kb on + strand, within GFF2737at 432.334 kb on + strand, within GFF2737at 432.432 kb on - strand, within GFF2737at 432.731 kb on + strand, within GFF2737at 432.732 kb on - strand, within GFF2737at 432.732 kb on - strand, within GFF2737at 432.784 kb on + strand, within GFF2737at 432.784 kb on + strand, within GFF2737at 432.785 kb on - strand, within GFF2737at 432.794 kb on + strand, within GFF2737at 432.794 kb on + strand, within GFF2737at 432.794 kb on + strand, within GFF2737at 432.794 kb on + strand, within GFF2737at 432.795 kb on - strand, within GFF2737at 432.795 kb on - strand, within GFF2737at 432.860 kb on + strand, within GFF2737at 432.860 kb on + strand, within GFF2737

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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429,585 + GFF2734 0.78 +1.0
429,585 + GFF2734 0.78 +1.2
429,628 - GFF2734 0.82 +0.3
429,645 + GFF2734 0.84 -0.4
429,646 - GFF2734 0.84 +0.2
429,646 - GFF2734 0.84 +1.5
429,661 - GFF2734 0.86 -0.2
429,661 - GFF2734 0.86 +0.4
429,661 - GFF2734 0.86 -0.2
429,661 - GFF2734 0.86 +0.0
429,714 + +0.9
429,714 + -0.1
429,714 + +1.5
429,715 - +0.0
429,715 - -0.5
429,715 - -1.7
429,717 + +0.1
429,717 + -0.5
429,717 + +1.5
429,718 - -1.6
429,827 + -1.1
429,828 - -0.2
429,828 - -0.0
430,010 + GFF2735 0.30 -0.5
430,010 + GFF2735 0.30 +0.2
430,010 + GFF2735 0.30 -0.6
430,010 + GFF2735 0.30 +0.4
430,011 - GFF2735 0.31 +0.3
430,011 - GFF2735 0.31 -0.3
430,011 - GFF2735 0.31 -0.6
430,052 + GFF2735 0.37 +0.3
430,052 + GFF2735 0.37 +0.6
430,145 + GFF2735 0.52 -0.5
430,146 - GFF2735 0.52 -0.9
430,205 + GFF2735 0.61 +0.6
430,206 - GFF2735 0.61 +0.3
430,206 - GFF2735 0.61 +0.4
430,283 + GFF2735 0.73 -0.0
430,283 + GFF2735 0.73 -0.4
430,283 + GFF2735 0.73 -0.9
430,344 - GFF2735 0.83 +0.6
430,464 - +0.7
430,503 + +0.1
430,503 + +0.4
430,513 + -0.3
430,554 + -2.0
430,569 - +0.1
430,569 - +0.5
430,569 - +1.0
430,572 + +0.7
430,572 + +1.4
430,573 - -0.8
430,573 - +0.6
430,573 - -0.4
431,023 + GFF2736 0.29 -0.0
431,023 + GFF2736 0.29 -0.2
431,024 - GFF2736 0.29 +0.2
431,032 + GFF2736 0.30 +0.4
431,033 - GFF2736 0.30 +0.9
431,056 + GFF2736 0.31 -0.4
431,056 + GFF2736 0.31 -1.3
431,056 + GFF2736 0.31 +0.4
431,057 - GFF2736 0.32 -0.1
431,057 - GFF2736 0.32 -0.8
431,057 - GFF2736 0.32 -0.1
431,057 - GFF2736 0.32 -0.3
431,057 - GFF2736 0.32 +1.4
431,057 - GFF2736 0.32 +0.7
431,057 - GFF2736 0.32 +0.4
431,119 + GFF2736 0.36 -0.2
431,119 + GFF2736 0.36 -0.3
431,146 + GFF2736 0.37 -1.3
431,146 + GFF2736 0.37 +0.2
431,147 - GFF2736 0.37 -0.2
431,147 - GFF2736 0.37 +0.4
431,147 - GFF2736 0.37 +0.6
431,395 + GFF2736 0.54 +0.3
431,395 + GFF2736 0.54 -1.1
431,395 + GFF2736 0.54 +0.7
431,396 - GFF2736 0.54 -0.4
431,396 - GFF2736 0.54 -0.0
431,396 - GFF2736 0.54 -0.8
431,396 - GFF2736 0.54 +0.1
431,605 + GFF2736 0.67 +1.3
431,605 + GFF2736 0.67 -0.2
431,605 + GFF2736 0.67 +0.7
431,606 - GFF2736 0.67 +1.0
431,606 - GFF2736 0.67 +1.6
431,606 - GFF2736 0.67 -0.1
431,606 - GFF2736 0.67 -0.7
431,710 + GFF2736 0.74 -0.4
431,710 + GFF2736 0.74 +0.1
431,710 + GFF2736 0.74 +0.3
431,711 - GFF2736 0.74 +0.4
431,711 - GFF2736 0.74 -0.3
431,711 - GFF2736 0.74 -0.9
431,761 + GFF2736 0.77 -0.4
431,761 + GFF2736 0.77 +1.0
431,762 - GFF2736 0.77 -0.9
431,854 + GFF2736 0.83 -0.0
431,855 - GFF2736 0.83 +0.7
431,920 + GFF2736 0.88 +1.2
431,920 + GFF2736 0.88 -0.4
431,920 + GFF2736 0.88 -1.0
431,920 + GFF2736 0.88 +0.4
431,920 + GFF2736 0.88 -0.3
431,921 - GFF2736 0.88 +0.4
432,239 + -0.8
432,328 + GFF2737 0.13 +1.0
432,329 - GFF2737 0.13 -0.2
432,334 + GFF2737 0.14 +0.8
432,334 + GFF2737 0.14 -0.8
432,334 + GFF2737 0.14 +0.4
432,432 - GFF2737 0.22 +0.3
432,731 + GFF2737 0.49 +1.7
432,732 - GFF2737 0.49 -0.6
432,732 - GFF2737 0.49 -0.3
432,784 + GFF2737 0.54 -0.4
432,784 + GFF2737 0.54 -0.2
432,785 - GFF2737 0.54 +0.1
432,794 + GFF2737 0.55 -0.9
432,794 + GFF2737 0.55 +0.2
432,794 + GFF2737 0.55 +0.2
432,794 + GFF2737 0.55 -0.9
432,795 - GFF2737 0.55 -0.1
432,795 - GFF2737 0.55 -0.3
432,860 + GFF2737 0.60 -1.2
432,860 + GFF2737 0.60 -1.2

Or see this region's nucleotide sequence