Strain Fitness in Xanthobacter sp. DMC5 around GFF2696

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2694 and GFF2695 are separated by 201 nucleotidesGFF2695 and GFF2696 are separated by 167 nucleotidesGFF2696 and GFF2697 are separated by 388 nucleotides GFF2694 - hypothetical protein, at 376,657 to 377,070 GFF2694 GFF2695 - hypothetical protein, at 377,272 to 377,544 GFF2695 GFF2696 - hypothetical protein, at 377,712 to 378,461 GFF2696 GFF2697 - Circadian clock protein kinase KaiC, at 378,850 to 380,373 GFF2697 Position (kb) 377 378 379Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 376.778 kb on + strand, within GFF2694at 376.778 kb on + strand, within GFF2694at 376.779 kb on - strand, within GFF2694at 376.779 kb on - strand, within GFF2694at 376.779 kb on - strand, within GFF2694at 376.779 kb on - strand, within GFF2694at 377.018 kb on + strand, within GFF2694at 377.018 kb on + strand, within GFF2694at 377.019 kb on - strand, within GFF2694at 377.019 kb on - strand, within GFF2694at 377.213 kb on + strandat 377.273 kb on + strandat 377.273 kb on + strandat 377.274 kb on - strandat 377.282 kb on + strandat 377.292 kb on + strandat 377.483 kb on + strand, within GFF2695at 377.483 kb on + strand, within GFF2695at 377.483 kb on + strand, within GFF2695at 377.483 kb on + strand, within GFF2695at 377.484 kb on - strand, within GFF2695at 377.484 kb on - strand, within GFF2695at 377.484 kb on - strand, within GFF2695at 377.484 kb on - strand, within GFF2695at 377.515 kb on + strand, within GFF2695at 377.515 kb on + strand, within GFF2695at 377.515 kb on + strand, within GFF2695at 377.515 kb on + strand, within GFF2695at 377.516 kb on - strand, within GFF2695at 377.516 kb on - strand, within GFF2695at 377.516 kb on - strand, within GFF2695at 377.649 kb on + strandat 377.649 kb on + strandat 377.650 kb on - strandat 377.711 kb on - strandat 377.809 kb on + strand, within GFF2696at 377.810 kb on - strand, within GFF2696at 377.910 kb on + strand, within GFF2696at 377.911 kb on - strand, within GFF2696at 377.911 kb on - strand, within GFF2696at 377.911 kb on - strand, within GFF2696at 377.911 kb on - strand, within GFF2696at 377.911 kb on - strand, within GFF2696at 378.092 kb on + strand, within GFF2696at 378.092 kb on + strand, within GFF2696at 378.178 kb on - strand, within GFF2696at 378.178 kb on - strand, within GFF2696at 378.313 kb on + strand, within GFF2696at 378.313 kb on + strand, within GFF2696at 378.313 kb on + strand, within GFF2696at 378.313 kb on + strand, within GFF2696at 378.313 kb on + strand, within GFF2696at 378.313 kb on + strand, within GFF2696at 378.314 kb on - strand, within GFF2696at 378.331 kb on + strand, within GFF2696at 378.331 kb on + strand, within GFF2696at 378.331 kb on + strand, within GFF2696at 378.331 kb on + strand, within GFF2696at 378.331 kb on + strand, within GFF2696at 378.331 kb on + strand, within GFF2696at 378.332 kb on - strand, within GFF2696at 378.332 kb on - strand, within GFF2696at 378.358 kb on - strand, within GFF2696at 378.590 kb on + strandat 378.590 kb on + strandat 378.750 kb on + strandat 378.876 kb on + strandat 378.876 kb on + strandat 378.876 kb on + strandat 378.876 kb on + strandat 378.876 kb on + strandat 378.876 kb on + strandat 378.877 kb on - strandat 378.877 kb on - strandat 378.877 kb on - strandat 378.880 kb on + strandat 378.880 kb on + strandat 378.881 kb on - strandat 378.881 kb on - strandat 378.881 kb on - strandat 378.881 kb on - strandat 378.881 kb on - strandat 378.881 kb on - strandat 378.881 kb on - strandat 378.881 kb on - strandat 378.881 kb on - strandat 378.881 kb on - strandat 378.881 kb on - strandat 378.995 kb on + strandat 378.995 kb on + strandat 378.995 kb on + strandat 378.995 kb on + strandat 378.995 kb on + strandat 378.995 kb on + strandat 378.996 kb on - strandat 379.045 kb on + strand, within GFF2697at 379.045 kb on + strand, within GFF2697at 379.045 kb on + strand, within GFF2697at 379.045 kb on + strand, within GFF2697at 379.046 kb on - strand, within GFF2697at 379.046 kb on - strand, within GFF2697at 379.046 kb on - strand, within GFF2697at 379.046 kb on - strand, within GFF2697at 379.046 kb on - strand, within GFF2697at 379.046 kb on - strand, within GFF2697at 379.046 kb on - strand, within GFF2697at 379.120 kb on - strand, within GFF2697at 379.120 kb on - strand, within GFF2697at 379.186 kb on + strand, within GFF2697at 379.186 kb on + strand, within GFF2697at 379.186 kb on + strand, within GFF2697at 379.186 kb on + strand, within GFF2697at 379.187 kb on - strand, within GFF2697at 379.205 kb on + strand, within GFF2697at 379.205 kb on + strand, within GFF2697at 379.205 kb on + strand, within GFF2697at 379.205 kb on + strand, within GFF2697at 379.205 kb on + strand, within GFF2697at 379.205 kb on + strand, within GFF2697at 379.205 kb on + strand, within GFF2697at 379.205 kb on + strand, within GFF2697at 379.205 kb on + strand, within GFF2697at 379.205 kb on + strand, within GFF2697at 379.205 kb on + strand, within GFF2697at 379.205 kb on + strand, within GFF2697at 379.206 kb on - strand, within GFF2697at 379.206 kb on - strand, within GFF2697at 379.206 kb on - strand, within GFF2697at 379.206 kb on - strand, within GFF2697at 379.206 kb on - strand, within GFF2697at 379.206 kb on - strand, within GFF2697at 379.206 kb on - strand, within GFF2697at 379.226 kb on + strand, within GFF2697at 379.328 kb on + strand, within GFF2697at 379.328 kb on + strand, within GFF2697at 379.328 kb on + strand, within GFF2697at 379.328 kb on + strand, within GFF2697at 379.329 kb on - strand, within GFF2697at 379.329 kb on - strand, within GFF2697at 379.329 kb on - strand, within GFF2697at 379.345 kb on + strand, within GFF2697at 379.345 kb on + strand, within GFF2697at 379.346 kb on - strand, within GFF2697at 379.346 kb on - strand, within GFF2697

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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376,778 + GFF2694 0.29 -0.3
376,778 + GFF2694 0.29 +0.3
376,779 - GFF2694 0.29 -0.8
376,779 - GFF2694 0.29 +0.5
376,779 - GFF2694 0.29 +0.6
376,779 - GFF2694 0.29 -0.1
377,018 + GFF2694 0.87 -0.5
377,018 + GFF2694 0.87 +0.1
377,019 - GFF2694 0.87 +0.4
377,019 - GFF2694 0.87 +0.2
377,213 + -1.9
377,273 + -0.9
377,273 + +1.4
377,274 - +0.4
377,282 + +0.7
377,292 + +1.3
377,483 + GFF2695 0.77 +0.6
377,483 + GFF2695 0.77 -0.0
377,483 + GFF2695 0.77 +0.2
377,483 + GFF2695 0.77 -0.2
377,484 - GFF2695 0.78 -0.4
377,484 - GFF2695 0.78 -0.0
377,484 - GFF2695 0.78 +1.9
377,484 - GFF2695 0.78 -0.9
377,515 + GFF2695 0.89 +0.8
377,515 + GFF2695 0.89 +0.1
377,515 + GFF2695 0.89 -0.0
377,515 + GFF2695 0.89 -1.6
377,516 - GFF2695 0.89 -1.4
377,516 - GFF2695 0.89 -0.6
377,516 - GFF2695 0.89 +0.2
377,649 + +0.7
377,649 + +1.1
377,650 - -0.1
377,711 - -1.6
377,809 + GFF2696 0.13 -0.0
377,810 - GFF2696 0.13 +0.1
377,910 + GFF2696 0.26 +0.5
377,911 - GFF2696 0.27 +0.4
377,911 - GFF2696 0.27 -0.0
377,911 - GFF2696 0.27 -0.1
377,911 - GFF2696 0.27 +0.2
377,911 - GFF2696 0.27 +1.4
378,092 + GFF2696 0.51 -0.0
378,092 + GFF2696 0.51 +1.2
378,178 - GFF2696 0.62 -0.1
378,178 - GFF2696 0.62 +0.6
378,313 + GFF2696 0.80 -2.7
378,313 + GFF2696 0.80 +0.8
378,313 + GFF2696 0.80 +0.2
378,313 + GFF2696 0.80 +0.2
378,313 + GFF2696 0.80 -0.0
378,313 + GFF2696 0.80 +0.8
378,314 - GFF2696 0.80 +0.7
378,331 + GFF2696 0.83 -0.4
378,331 + GFF2696 0.83 +0.6
378,331 + GFF2696 0.83 -0.5
378,331 + GFF2696 0.83 +0.1
378,331 + GFF2696 0.83 -0.4
378,331 + GFF2696 0.83 +0.8
378,332 - GFF2696 0.83 +0.1
378,332 - GFF2696 0.83 -0.4
378,358 - GFF2696 0.86 -0.3
378,590 + +0.4
378,590 + +0.1
378,750 + -0.4
378,876 + -0.9
378,876 + -0.2
378,876 + -0.9
378,876 + +1.9
378,876 + -1.7
378,876 + +0.5
378,877 - -1.4
378,877 - -0.0
378,877 - +0.3
378,880 + +0.5
378,880 + +1.9
378,881 - -0.0
378,881 - +0.6
378,881 - +1.8
378,881 - -0.3
378,881 - -1.7
378,881 - +1.2
378,881 - +0.8
378,881 - -0.5
378,881 - +0.5
378,881 - +0.1
378,881 - -0.7
378,995 + +2.1
378,995 + +2.0
378,995 + -0.6
378,995 + +0.8
378,995 + -1.9
378,995 + -0.2
378,996 - -0.1
379,045 + GFF2697 0.13 -0.3
379,045 + GFF2697 0.13 -1.1
379,045 + GFF2697 0.13 +0.8
379,045 + GFF2697 0.13 -0.3
379,046 - GFF2697 0.13 +0.2
379,046 - GFF2697 0.13 -0.3
379,046 - GFF2697 0.13 -0.2
379,046 - GFF2697 0.13 +0.5
379,046 - GFF2697 0.13 -0.0
379,046 - GFF2697 0.13 -0.4
379,046 - GFF2697 0.13 +0.1
379,120 - GFF2697 0.18 +0.0
379,120 - GFF2697 0.18 -0.7
379,186 + GFF2697 0.22 -0.7
379,186 + GFF2697 0.22 +0.1
379,186 + GFF2697 0.22 +0.6
379,186 + GFF2697 0.22 +0.1
379,187 - GFF2697 0.22 +0.6
379,205 + GFF2697 0.23 +0.6
379,205 + GFF2697 0.23 +0.7
379,205 + GFF2697 0.23 -0.3
379,205 + GFF2697 0.23 -0.2
379,205 + GFF2697 0.23 +0.6
379,205 + GFF2697 0.23 -0.4
379,205 + GFF2697 0.23 +2.1
379,205 + GFF2697 0.23 -0.3
379,205 + GFF2697 0.23 +1.2
379,205 + GFF2697 0.23 -0.9
379,205 + GFF2697 0.23 -1.2
379,205 + GFF2697 0.23 -3.0
379,206 - GFF2697 0.23 -0.3
379,206 - GFF2697 0.23 +0.3
379,206 - GFF2697 0.23 +0.1
379,206 - GFF2697 0.23 -0.1
379,206 - GFF2697 0.23 +0.6
379,206 - GFF2697 0.23 -0.6
379,206 - GFF2697 0.23 +0.9
379,226 + GFF2697 0.25 +0.3
379,328 + GFF2697 0.31 +1.0
379,328 + GFF2697 0.31 +0.8
379,328 + GFF2697 0.31 +0.9
379,328 + GFF2697 0.31 -0.5
379,329 - GFF2697 0.31 +0.5
379,329 - GFF2697 0.31 +1.2
379,329 - GFF2697 0.31 -0.2
379,345 + GFF2697 0.32 -0.6
379,345 + GFF2697 0.32 -0.5
379,346 - GFF2697 0.33 -0.3
379,346 - GFF2697 0.33 -0.4

Or see this region's nucleotide sequence