Strain Fitness in Xanthobacter sp. DMC5 around GFF2666

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2665 and GFF2666 are separated by 6 nucleotidesGFF2666 and GFF2667 overlap by 4 nucleotides GFF2665 - Gluconate 2-dehydrogenase flavoprotein, at 349,336 to 350,853 GFF2665 GFF2666 - Gluconate 2-dehydrogenase flavoprotein, at 350,860 to 351,102 GFF2666 GFF2667 - Gluconate 2-dehydrogenase cytochrome c subunit, at 351,099 to 352,325 GFF2667 Position (kb) 350 351 352Strain fitness (log2 ratio) -2 -1 0 1 2at 349.897 kb on + strand, within GFF2665at 349.897 kb on + strand, within GFF2665at 349.898 kb on - strand, within GFF2665at 349.898 kb on - strand, within GFF2665at 349.898 kb on - strand, within GFF2665at 349.924 kb on + strand, within GFF2665at 349.925 kb on - strand, within GFF2665at 349.925 kb on - strand, within GFF2665at 349.925 kb on - strand, within GFF2665at 349.939 kb on - strand, within GFF2665at 349.966 kb on + strand, within GFF2665at 349.966 kb on + strand, within GFF2665at 349.967 kb on - strand, within GFF2665at 349.967 kb on - strand, within GFF2665at 349.967 kb on - strand, within GFF2665at 350.008 kb on + strand, within GFF2665at 350.009 kb on - strand, within GFF2665at 350.068 kb on + strand, within GFF2665at 350.069 kb on - strand, within GFF2665at 350.083 kb on + strand, within GFF2665at 350.083 kb on + strand, within GFF2665at 350.083 kb on + strand, within GFF2665at 350.083 kb on + strand, within GFF2665at 350.084 kb on - strand, within GFF2665at 350.084 kb on - strand, within GFF2665at 350.125 kb on - strand, within GFF2665at 350.223 kb on + strand, within GFF2665at 350.223 kb on + strand, within GFF2665at 350.223 kb on + strand, within GFF2665at 350.223 kb on + strand, within GFF2665at 350.224 kb on - strand, within GFF2665at 350.224 kb on - strand, within GFF2665at 350.224 kb on - strand, within GFF2665at 350.224 kb on - strand, within GFF2665at 350.326 kb on + strand, within GFF2665at 350.326 kb on + strand, within GFF2665at 350.326 kb on + strand, within GFF2665at 350.327 kb on - strand, within GFF2665at 350.327 kb on - strand, within GFF2665at 350.327 kb on - strand, within GFF2665at 350.327 kb on - strand, within GFF2665at 350.366 kb on - strand, within GFF2665at 350.366 kb on - strand, within GFF2665at 350.366 kb on - strand, within GFF2665at 350.366 kb on - strand, within GFF2665at 350.620 kb on + strand, within GFF2665at 350.620 kb on + strand, within GFF2665at 350.620 kb on + strand, within GFF2665at 350.620 kb on + strand, within GFF2665at 350.621 kb on - strand, within GFF2665at 350.621 kb on - strand, within GFF2665at 350.621 kb on - strand, within GFF2665at 350.621 kb on - strand, within GFF2665at 350.621 kb on - strand, within GFF2665at 350.621 kb on - strand, within GFF2665at 350.659 kb on + strand, within GFF2665at 350.660 kb on - strand, within GFF2665at 350.660 kb on - strand, within GFF2665at 350.677 kb on + strand, within GFF2665at 350.677 kb on + strand, within GFF2665at 350.677 kb on + strand, within GFF2665at 350.678 kb on - strand, within GFF2665at 350.678 kb on - strand, within GFF2665at 350.698 kb on + strand, within GFF2665at 350.698 kb on + strand, within GFF2665at 350.699 kb on - strand, within GFF2665at 350.699 kb on - strand, within GFF2665at 350.699 kb on - strand, within GFF2665at 350.773 kb on + strandat 350.773 kb on + strandat 350.774 kb on - strandat 350.774 kb on - strandat 350.774 kb on - strandat 350.774 kb on - strandat 350.774 kb on - strandat 350.828 kb on + strandat 350.828 kb on + strandat 350.828 kb on + strandat 350.829 kb on - strandat 350.829 kb on - strandat 350.829 kb on - strandat 350.851 kb on + strandat 350.851 kb on + strandat 350.852 kb on - strandat 350.852 kb on - strandat 350.866 kb on + strandat 350.867 kb on - strandat 350.867 kb on - strandat 350.935 kb on + strand, within GFF2666at 350.936 kb on - strand, within GFF2666at 351.004 kb on + strand, within GFF2666at 351.005 kb on - strand, within GFF2666at 351.005 kb on - strand, within GFF2666at 351.005 kb on - strand, within GFF2666at 351.037 kb on + strand, within GFF2666at 351.037 kb on + strand, within GFF2666at 351.038 kb on - strand, within GFF2666at 351.038 kb on - strand, within GFF2666at 351.038 kb on - strand, within GFF2666at 351.067 kb on + strand, within GFF2666at 351.067 kb on + strand, within GFF2666at 351.067 kb on + strand, within GFF2666at 351.067 kb on + strand, within GFF2666at 351.068 kb on - strand, within GFF2666at 351.068 kb on - strand, within GFF2666at 351.068 kb on - strand, within GFF2666at 351.068 kb on - strand, within GFF2666at 351.068 kb on - strand, within GFF2666at 351.068 kb on - strand, within GFF2666at 351.068 kb on - strand, within GFF2666at 351.068 kb on - strand, within GFF2666at 351.195 kb on + strandat 351.196 kb on - strandat 351.196 kb on - strandat 351.206 kb on - strandat 351.206 kb on - strandat 351.206 kb on - strandat 351.394 kb on - strand, within GFF2667at 351.427 kb on - strand, within GFF2667at 351.427 kb on - strand, within GFF2667at 351.427 kb on - strand, within GFF2667at 351.427 kb on - strand, within GFF2667at 351.427 kb on - strand, within GFF2667at 351.469 kb on - strand, within GFF2667at 351.469 kb on - strand, within GFF2667at 351.585 kb on + strand, within GFF2667at 351.586 kb on - strand, within GFF2667at 351.586 kb on - strand, within GFF2667at 351.586 kb on - strand, within GFF2667at 351.586 kb on - strand, within GFF2667at 351.630 kb on + strand, within GFF2667at 351.631 kb on - strand, within GFF2667at 351.631 kb on - strand, within GFF2667at 351.752 kb on + strand, within GFF2667at 351.752 kb on + strand, within GFF2667at 351.753 kb on - strand, within GFF2667at 351.753 kb on - strand, within GFF2667at 351.808 kb on - strand, within GFF2667at 351.831 kb on + strand, within GFF2667at 351.894 kb on - strand, within GFF2667at 351.918 kb on + strand, within GFF2667at 351.918 kb on + strand, within GFF2667at 351.918 kb on + strand, within GFF2667at 351.918 kb on + strand, within GFF2667at 351.919 kb on - strand, within GFF2667at 351.919 kb on - strand, within GFF2667at 351.919 kb on - strand, within GFF2667at 351.964 kb on + strand, within GFF2667at 351.964 kb on + strand, within GFF2667at 351.964 kb on + strand, within GFF2667at 351.965 kb on - strand, within GFF2667at 351.965 kb on - strand, within GFF2667at 351.965 kb on - strand, within GFF2667at 351.965 kb on - strand, within GFF2667at 352.005 kb on + strand, within GFF2667at 352.005 kb on + strand, within GFF2667at 352.005 kb on + strand, within GFF2667at 352.005 kb on + strand, within GFF2667at 352.005 kb on + strand, within GFF2667at 352.005 kb on + strand, within GFF2667at 352.006 kb on - strand, within GFF2667at 352.006 kb on - strand, within GFF2667at 352.006 kb on - strand, within GFF2667at 352.006 kb on - strand, within GFF2667at 352.092 kb on + strand, within GFF2667

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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349,897 + GFF2665 0.37 +0.1
349,897 + GFF2665 0.37 -0.2
349,898 - GFF2665 0.37 +0.4
349,898 - GFF2665 0.37 +0.2
349,898 - GFF2665 0.37 -0.8
349,924 + GFF2665 0.39 -0.8
349,925 - GFF2665 0.39 +0.5
349,925 - GFF2665 0.39 +0.6
349,925 - GFF2665 0.39 +0.2
349,939 - GFF2665 0.40 +0.7
349,966 + GFF2665 0.42 +1.0
349,966 + GFF2665 0.42 +0.5
349,967 - GFF2665 0.42 -0.0
349,967 - GFF2665 0.42 -0.1
349,967 - GFF2665 0.42 -1.2
350,008 + GFF2665 0.44 -1.0
350,009 - GFF2665 0.44 +0.3
350,068 + GFF2665 0.48 -0.3
350,069 - GFF2665 0.48 -0.1
350,083 + GFF2665 0.49 -1.0
350,083 + GFF2665 0.49 -0.3
350,083 + GFF2665 0.49 +0.2
350,083 + GFF2665 0.49 -0.1
350,084 - GFF2665 0.49 -0.2
350,084 - GFF2665 0.49 -0.1
350,125 - GFF2665 0.52 -0.4
350,223 + GFF2665 0.58 +1.4
350,223 + GFF2665 0.58 +0.1
350,223 + GFF2665 0.58 -0.4
350,223 + GFF2665 0.58 -0.5
350,224 - GFF2665 0.58 +0.5
350,224 - GFF2665 0.58 +0.5
350,224 - GFF2665 0.58 -0.5
350,224 - GFF2665 0.58 -0.1
350,326 + GFF2665 0.65 -0.2
350,326 + GFF2665 0.65 +0.8
350,326 + GFF2665 0.65 -0.4
350,327 - GFF2665 0.65 -0.2
350,327 - GFF2665 0.65 -0.0
350,327 - GFF2665 0.65 +0.8
350,327 - GFF2665 0.65 +0.3
350,366 - GFF2665 0.68 -0.8
350,366 - GFF2665 0.68 -0.8
350,366 - GFF2665 0.68 +0.0
350,366 - GFF2665 0.68 -0.6
350,620 + GFF2665 0.85 +0.0
350,620 + GFF2665 0.85 -0.0
350,620 + GFF2665 0.85 -0.4
350,620 + GFF2665 0.85 -0.4
350,621 - GFF2665 0.85 -0.2
350,621 - GFF2665 0.85 +1.5
350,621 - GFF2665 0.85 -1.8
350,621 - GFF2665 0.85 +0.8
350,621 - GFF2665 0.85 -0.7
350,621 - GFF2665 0.85 +0.4
350,659 + GFF2665 0.87 -0.1
350,660 - GFF2665 0.87 +1.0
350,660 - GFF2665 0.87 +0.1
350,677 + GFF2665 0.88 +0.3
350,677 + GFF2665 0.88 +1.8
350,677 + GFF2665 0.88 -0.5
350,678 - GFF2665 0.88 +1.0
350,678 - GFF2665 0.88 -1.1
350,698 + GFF2665 0.90 -1.0
350,698 + GFF2665 0.90 -0.7
350,699 - GFF2665 0.90 +1.2
350,699 - GFF2665 0.90 +0.9
350,699 - GFF2665 0.90 +0.3
350,773 + -0.1
350,773 + +0.6
350,774 - -0.5
350,774 - -0.3
350,774 - -0.9
350,774 - +1.7
350,774 - -0.6
350,828 + -0.1
350,828 + -2.1
350,828 + +0.2
350,829 - -1.6
350,829 - +0.0
350,829 - -0.2
350,851 + -0.4
350,851 + -0.2
350,852 - +1.1
350,852 - -0.2
350,866 + +0.0
350,867 - +0.2
350,867 - -0.9
350,935 + GFF2666 0.31 +0.0
350,936 - GFF2666 0.31 -0.2
351,004 + GFF2666 0.59 +0.0
351,005 - GFF2666 0.60 +0.4
351,005 - GFF2666 0.60 +0.1
351,005 - GFF2666 0.60 +0.1
351,037 + GFF2666 0.73 -0.4
351,037 + GFF2666 0.73 +1.4
351,038 - GFF2666 0.73 -0.9
351,038 - GFF2666 0.73 +0.2
351,038 - GFF2666 0.73 -0.0
351,067 + GFF2666 0.85 -0.4
351,067 + GFF2666 0.85 -1.5
351,067 + GFF2666 0.85 +1.0
351,067 + GFF2666 0.85 +0.2
351,068 - GFF2666 0.86 -0.3
351,068 - GFF2666 0.86 +0.1
351,068 - GFF2666 0.86 -1.3
351,068 - GFF2666 0.86 +0.1
351,068 - GFF2666 0.86 +0.1
351,068 - GFF2666 0.86 -0.1
351,068 - GFF2666 0.86 +0.1
351,068 - GFF2666 0.86 -1.3
351,195 + +0.2
351,196 - +1.4
351,196 - +1.2
351,206 - +0.0
351,206 - -0.7
351,206 - +0.1
351,394 - GFF2667 0.24 +1.1
351,427 - GFF2667 0.27 -0.2
351,427 - GFF2667 0.27 -0.2
351,427 - GFF2667 0.27 +0.1
351,427 - GFF2667 0.27 -0.6
351,427 - GFF2667 0.27 -0.8
351,469 - GFF2667 0.30 -0.9
351,469 - GFF2667 0.30 -0.0
351,585 + GFF2667 0.40 +1.1
351,586 - GFF2667 0.40 -0.6
351,586 - GFF2667 0.40 -0.4
351,586 - GFF2667 0.40 -1.4
351,586 - GFF2667 0.40 +0.3
351,630 + GFF2667 0.43 +0.3
351,631 - GFF2667 0.43 -0.2
351,631 - GFF2667 0.43 +0.7
351,752 + GFF2667 0.53 -0.1
351,752 + GFF2667 0.53 -0.6
351,753 - GFF2667 0.53 +0.2
351,753 - GFF2667 0.53 +1.4
351,808 - GFF2667 0.58 -0.1
351,831 + GFF2667 0.60 -0.1
351,894 - GFF2667 0.65 -0.1
351,918 + GFF2667 0.67 -0.2
351,918 + GFF2667 0.67 +0.6
351,918 + GFF2667 0.67 -1.7
351,918 + GFF2667 0.67 +0.6
351,919 - GFF2667 0.67 -1.2
351,919 - GFF2667 0.67 +0.9
351,919 - GFF2667 0.67 -1.0
351,964 + GFF2667 0.70 +1.2
351,964 + GFF2667 0.70 -1.0
351,964 + GFF2667 0.70 -0.1
351,965 - GFF2667 0.71 +0.3
351,965 - GFF2667 0.71 +0.3
351,965 - GFF2667 0.71 -1.6
351,965 - GFF2667 0.71 +0.3
352,005 + GFF2667 0.74 -0.3
352,005 + GFF2667 0.74 -0.3
352,005 + GFF2667 0.74 +0.4
352,005 + GFF2667 0.74 +0.2
352,005 + GFF2667 0.74 -0.7
352,005 + GFF2667 0.74 -1.3
352,006 - GFF2667 0.74 +0.1
352,006 - GFF2667 0.74 +0.9
352,006 - GFF2667 0.74 +0.1
352,006 - GFF2667 0.74 +0.7
352,092 + GFF2667 0.81 -0.4

Or see this region's nucleotide sequence