Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2654 and GFF2655 overlap by 4 nucleotides GFF2655 and GFF2656 overlap by 4 nucleotides GFF2656 and GFF2657 overlap by 4 nucleotides GFF2657 and GFF2658 overlap by 8 nucleotides GFF2658 and GFF2659 are separated by 96 nucleotides GFF2659 and GFF2660 are separated by 18 nucleotides GFF2660 and GFF2661 are separated by 22 nucleotides
GFF2654 - hypothetical protein, at 341,554 to 343,506
GFF2654
GFF2655 - hypothetical protein, at 343,503 to 344,123
GFF2655
GFF2656 - hypothetical protein, at 344,120 to 344,443
GFF2656
GFF2657 - hypothetical protein, at 344,440 to 345,270
GFF2657
GFF2658 - hypothetical protein, at 345,263 to 345,697
GFF2658
GFF2659 - hypothetical protein, at 345,794 to 345,973
GFF2659
GFF2660 - hypothetical protein, at 345,992 to 346,204
GFF2660
GFF2661 - hypothetical protein, at 346,227 to 346,451
GFF2661
Position (kb) 344
345
346 Strain fitness (log2 ratio) -2
-1
0
1
2 at 343.451 kb on - strand at 343.451 kb on - strand at 343.644 kb on + strand, within GFF2655 at 343.644 kb on + strand, within GFF2655 at 343.644 kb on + strand, within GFF2655 at 343.645 kb on - strand, within GFF2655 at 343.645 kb on - strand, within GFF2655 at 343.645 kb on - strand, within GFF2655 at 343.645 kb on - strand, within GFF2655 at 343.645 kb on - strand, within GFF2655 at 343.645 kb on - strand, within GFF2655 at 343.645 kb on - strand, within GFF2655 at 343.645 kb on - strand, within GFF2655 at 343.645 kb on - strand, within GFF2655 at 343.650 kb on + strand, within GFF2655 at 343.650 kb on + strand, within GFF2655 at 343.651 kb on - strand, within GFF2655 at 343.651 kb on - strand, within GFF2655 at 343.651 kb on - strand, within GFF2655 at 343.724 kb on - strand, within GFF2655 at 343.724 kb on - strand, within GFF2655 at 343.724 kb on - strand, within GFF2655 at 343.724 kb on - strand, within GFF2655 at 343.896 kb on + strand, within GFF2655 at 343.896 kb on + strand, within GFF2655 at 343.896 kb on + strand, within GFF2655 at 343.896 kb on + strand, within GFF2655 at 343.897 kb on - strand, within GFF2655 at 343.897 kb on - strand, within GFF2655 at 343.897 kb on - strand, within GFF2655 at 343.897 kb on - strand, within GFF2655 at 343.897 kb on - strand, within GFF2655 at 343.897 kb on - strand, within GFF2655 at 343.897 kb on - strand, within GFF2655 at 343.915 kb on + strand, within GFF2655 at 343.916 kb on - strand, within GFF2655 at 343.916 kb on - strand, within GFF2655 at 343.932 kb on - strand, within GFF2655 at 343.986 kb on + strand, within GFF2655 at 343.986 kb on + strand, within GFF2655 at 343.986 kb on + strand, within GFF2655 at 343.986 kb on + strand, within GFF2655 at 343.986 kb on + strand, within GFF2655 at 343.986 kb on + strand, within GFF2655 at 343.986 kb on + strand, within GFF2655 at 343.986 kb on + strand, within GFF2655 at 343.987 kb on - strand, within GFF2655 at 344.040 kb on + strand, within GFF2655 at 344.040 kb on + strand, within GFF2655 at 344.040 kb on + strand, within GFF2655 at 344.041 kb on - strand, within GFF2655 at 344.041 kb on - strand, within GFF2655 at 344.076 kb on + strand at 344.076 kb on + strand at 344.076 kb on + strand at 344.076 kb on + strand at 344.076 kb on + strand at 344.076 kb on + strand at 344.077 kb on - strand at 344.077 kb on - strand at 344.077 kb on - strand at 344.077 kb on - strand at 344.088 kb on + strand at 344.088 kb on + strand at 344.089 kb on - strand at 344.089 kb on - strand at 344.089 kb on - strand at 344.204 kb on + strand, within GFF2656 at 344.204 kb on + strand, within GFF2656 at 344.205 kb on - strand, within GFF2656 at 344.205 kb on - strand, within GFF2656 at 344.229 kb on - strand, within GFF2656 at 344.229 kb on - strand, within GFF2656 at 344.229 kb on - strand, within GFF2656 at 344.229 kb on - strand, within GFF2656 at 344.397 kb on + strand, within GFF2656 at 344.397 kb on + strand, within GFF2656 at 344.398 kb on - strand, within GFF2656 at 344.398 kb on - strand, within GFF2656 at 344.398 kb on - strand, within GFF2656 at 344.423 kb on + strand at 344.475 kb on + strand at 344.475 kb on + strand at 344.475 kb on + strand at 344.475 kb on + strand at 344.475 kb on + strand at 344.475 kb on + strand at 344.476 kb on - strand at 344.476 kb on - strand at 344.476 kb on - strand at 344.545 kb on + strand, within GFF2657 at 344.545 kb on + strand, within GFF2657 at 344.545 kb on + strand, within GFF2657 at 344.545 kb on + strand, within GFF2657 at 344.545 kb on + strand, within GFF2657 at 344.545 kb on + strand, within GFF2657 at 344.545 kb on + strand, within GFF2657 at 344.546 kb on - strand, within GFF2657 at 344.546 kb on - strand, within GFF2657 at 344.546 kb on - strand, within GFF2657 at 344.546 kb on - strand, within GFF2657 at 344.546 kb on - strand, within GFF2657 at 344.546 kb on - strand, within GFF2657 at 344.546 kb on - strand, within GFF2657 at 344.546 kb on - strand, within GFF2657 at 344.609 kb on + strand, within GFF2657 at 344.609 kb on + strand, within GFF2657 at 344.609 kb on + strand, within GFF2657 at 344.610 kb on - strand, within GFF2657 at 344.610 kb on - strand, within GFF2657 at 344.610 kb on - strand, within GFF2657 at 344.610 kb on - strand, within GFF2657 at 344.610 kb on - strand, within GFF2657 at 344.610 kb on - strand, within GFF2657 at 344.657 kb on + strand, within GFF2657 at 344.657 kb on + strand, within GFF2657 at 344.657 kb on + strand, within GFF2657 at 344.657 kb on + strand, within GFF2657 at 344.657 kb on + strand, within GFF2657 at 344.657 kb on + strand, within GFF2657 at 344.658 kb on - strand, within GFF2657 at 344.658 kb on - strand, within GFF2657 at 344.786 kb on + strand, within GFF2657 at 344.786 kb on + strand, within GFF2657 at 344.787 kb on - strand, within GFF2657 at 344.787 kb on - strand, within GFF2657 at 344.828 kb on + strand, within GFF2657 at 344.828 kb on + strand, within GFF2657 at 344.868 kb on - strand, within GFF2657 at 345.026 kb on + strand, within GFF2657 at 345.026 kb on + strand, within GFF2657 at 345.106 kb on + strand, within GFF2657 at 345.205 kb on + strand at 345.205 kb on + strand at 345.205 kb on + strand at 345.205 kb on + strand at 345.205 kb on + strand at 345.205 kb on + strand at 345.205 kb on + strand at 345.205 kb on + strand at 345.205 kb on + strand at 345.205 kb on + strand at 345.205 kb on + strand at 345.205 kb on + strand at 345.205 kb on + strand at 345.206 kb on - strand at 345.206 kb on - strand at 345.206 kb on - strand at 345.206 kb on - strand at 345.206 kb on - strand at 345.206 kb on - strand at 345.206 kb on - strand at 345.206 kb on - strand at 345.206 kb on - strand at 345.206 kb on - strand at 345.206 kb on - strand at 345.206 kb on - strand at 345.316 kb on - strand, within GFF2658 at 345.316 kb on - strand, within GFF2658 at 345.667 kb on + strand at 345.667 kb on + strand at 345.667 kb on + strand at 345.668 kb on - strand at 345.668 kb on - strand at 345.668 kb on - strand at 345.674 kb on + strand at 345.674 kb on + strand at 345.674 kb on + strand at 345.674 kb on + strand at 345.674 kb on + strand at 345.674 kb on + strand at 345.675 kb on - strand at 345.675 kb on - strand at 345.719 kb on + strand at 345.719 kb on + strand at 345.719 kb on + strand at 345.719 kb on + strand at 345.720 kb on - strand at 345.871 kb on + strand, within GFF2659 at 345.872 kb on - strand, within GFF2659 at 345.952 kb on - strand, within GFF2659 at 345.956 kb on + strand at 345.956 kb on + strand at 345.956 kb on + strand at 345.957 kb on - strand at 345.972 kb on - strand at 345.972 kb on - strand at 345.972 kb on - strand at 346.069 kb on + strand, within GFF2660 at 346.070 kb on - strand, within GFF2660 at 346.072 kb on + strand, within GFF2660 at 346.072 kb on + strand, within GFF2660 at 346.072 kb on + strand, within GFF2660 at 346.072 kb on + strand, within GFF2660 at 346.072 kb on + strand, within GFF2660 at 346.072 kb on + strand, within GFF2660 at 346.073 kb on - strand, within GFF2660 at 346.073 kb on - strand, within GFF2660 at 346.073 kb on - strand, within GFF2660 at 346.073 kb on - strand, within GFF2660 at 346.073 kb on - strand, within GFF2660 at 346.073 kb on - strand, within GFF2660 at 346.149 kb on - strand, within GFF2660 at 346.149 kb on - strand, within GFF2660 at 346.149 kb on - strand, within GFF2660 at 346.225 kb on + strand at 346.225 kb on + strand at 346.225 kb on + strand at 346.225 kb on + strand at 346.225 kb on + strand at 346.225 kb on + strand at 346.226 kb on - strand at 346.226 kb on - strand at 346.226 kb on - strand at 346.226 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 343,451 - -1.3 343,451 - +0.7 343,644 + GFF2655 0.23 -1.9 343,644 + GFF2655 0.23 +0.8 343,644 + GFF2655 0.23 -1.4 343,645 - GFF2655 0.23 +1.0 343,645 - GFF2655 0.23 -0.0 343,645 - GFF2655 0.23 +0.4 343,645 - GFF2655 0.23 -1.0 343,645 - GFF2655 0.23 -0.0 343,645 - GFF2655 0.23 -0.2 343,645 - GFF2655 0.23 -0.4 343,645 - GFF2655 0.23 +0.2 343,645 - GFF2655 0.23 +0.6 343,650 + GFF2655 0.24 +0.1 343,650 + GFF2655 0.24 -0.2 343,651 - GFF2655 0.24 -0.9 343,651 - GFF2655 0.24 +0.5 343,651 - GFF2655 0.24 +0.1 343,724 - GFF2655 0.36 -0.3 343,724 - GFF2655 0.36 -0.2 343,724 - GFF2655 0.36 -0.2 343,724 - GFF2655 0.36 -0.7 343,896 + GFF2655 0.63 +0.2 343,896 + GFF2655 0.63 +0.3 343,896 + GFF2655 0.63 -0.4 343,896 + GFF2655 0.63 -1.0 343,897 - GFF2655 0.63 +0.4 343,897 - GFF2655 0.63 -0.9 343,897 - GFF2655 0.63 +2.4 343,897 - GFF2655 0.63 +0.5 343,897 - GFF2655 0.63 -0.4 343,897 - GFF2655 0.63 +0.6 343,897 - GFF2655 0.63 +1.8 343,915 + GFF2655 0.66 -0.1 343,916 - GFF2655 0.67 -0.0 343,916 - GFF2655 0.67 -0.2 343,932 - GFF2655 0.69 -0.1 343,986 + GFF2655 0.78 +1.4 343,986 + GFF2655 0.78 -0.0 343,986 + GFF2655 0.78 +0.4 343,986 + GFF2655 0.78 +0.4 343,986 + GFF2655 0.78 -1.0 343,986 + GFF2655 0.78 +0.5 343,986 + GFF2655 0.78 +0.7 343,986 + GFF2655 0.78 +0.9 343,987 - GFF2655 0.78 -2.1 344,040 + GFF2655 0.86 +0.0 344,040 + GFF2655 0.86 -1.7 344,040 + GFF2655 0.86 +1.4 344,041 - GFF2655 0.87 +0.0 344,041 - GFF2655 0.87 -0.1 344,076 + +0.1 344,076 + +0.5 344,076 + +1.4 344,076 + +0.5 344,076 + +0.6 344,076 + +0.4 344,077 - +2.7 344,077 - +0.7 344,077 - -0.7 344,077 - +1.0 344,088 + -0.6 344,088 + +0.3 344,089 - +0.2 344,089 - +0.0 344,089 - +1.2 344,204 + GFF2656 0.26 -0.4 344,204 + GFF2656 0.26 -0.2 344,205 - GFF2656 0.26 +1.1 344,205 - GFF2656 0.26 +1.2 344,229 - GFF2656 0.34 -0.8 344,229 - GFF2656 0.34 -0.0 344,229 - GFF2656 0.34 -0.0 344,229 - GFF2656 0.34 -1.6 344,397 + GFF2656 0.85 +0.0 344,397 + GFF2656 0.85 -0.3 344,398 - GFF2656 0.86 -0.1 344,398 - GFF2656 0.86 +0.4 344,398 - GFF2656 0.86 -0.4 344,423 + -0.6 344,475 + +0.2 344,475 + -0.3 344,475 + +0.3 344,475 + +1.0 344,475 + +0.1 344,475 + -0.3 344,476 - -0.3 344,476 - -1.0 344,476 - -1.7 344,545 + GFF2657 0.13 -0.1 344,545 + GFF2657 0.13 +0.7 344,545 + GFF2657 0.13 -1.8 344,545 + GFF2657 0.13 +0.5 344,545 + GFF2657 0.13 -1.0 344,545 + GFF2657 0.13 -0.4 344,545 + GFF2657 0.13 +0.3 344,546 - GFF2657 0.13 +0.3 344,546 - GFF2657 0.13 +0.8 344,546 - GFF2657 0.13 +0.2 344,546 - GFF2657 0.13 +0.6 344,546 - GFF2657 0.13 -0.5 344,546 - GFF2657 0.13 +0.0 344,546 - GFF2657 0.13 +1.0 344,546 - GFF2657 0.13 -0.6 344,609 + GFF2657 0.20 -1.1 344,609 + GFF2657 0.20 +0.6 344,609 + GFF2657 0.20 +0.4 344,610 - GFF2657 0.20 -0.5 344,610 - GFF2657 0.20 -0.5 344,610 - GFF2657 0.20 -1.0 344,610 - GFF2657 0.20 -0.8 344,610 - GFF2657 0.20 +0.8 344,610 - GFF2657 0.20 -1.2 344,657 + GFF2657 0.26 +0.2 344,657 + GFF2657 0.26 -0.0 344,657 + GFF2657 0.26 +1.0 344,657 + GFF2657 0.26 -0.1 344,657 + GFF2657 0.26 +0.9 344,657 + GFF2657 0.26 -2.5 344,658 - GFF2657 0.26 -0.2 344,658 - GFF2657 0.26 +0.5 344,786 + GFF2657 0.42 +0.1 344,786 + GFF2657 0.42 -0.0 344,787 - GFF2657 0.42 -0.8 344,787 - GFF2657 0.42 -1.0 344,828 + GFF2657 0.47 -0.4 344,828 + GFF2657 0.47 +1.6 344,868 - GFF2657 0.52 +0.0 345,026 + GFF2657 0.71 -0.4 345,026 + GFF2657 0.71 -0.1 345,106 + GFF2657 0.80 +0.3 345,205 + +0.4 345,205 + +1.6 345,205 + +0.6 345,205 + +0.2 345,205 + -0.1 345,205 + +0.4 345,205 + -0.1 345,205 + -0.1 345,205 + +0.6 345,205 + +0.2 345,205 + -1.0 345,205 + +1.8 345,205 + +0.0 345,206 - +0.7 345,206 - +0.0 345,206 - -0.5 345,206 - +1.3 345,206 - +0.2 345,206 - -0.0 345,206 - -1.2 345,206 - +1.3 345,206 - -0.0 345,206 - -0.1 345,206 - +0.1 345,206 - -0.9 345,316 - GFF2658 0.12 +0.7 345,316 - GFF2658 0.12 +0.6 345,667 + -1.8 345,667 + -1.1 345,667 + -0.4 345,668 - +0.2 345,668 - -0.3 345,668 - +0.9 345,674 + +0.5 345,674 + +0.3 345,674 + -0.2 345,674 + +0.0 345,674 + +0.6 345,674 + -0.4 345,675 - -0.2 345,675 - -1.3 345,719 + +0.2 345,719 + +0.1 345,719 + -1.9 345,719 + +1.6 345,720 - +0.6 345,871 + GFF2659 0.43 -0.1 345,872 - GFF2659 0.43 +0.5 345,952 - GFF2659 0.88 -1.8 345,956 + -0.4 345,956 + +0.0 345,956 + +0.8 345,957 - -1.0 345,972 - -0.5 345,972 - -0.5 345,972 - +0.5 346,069 + GFF2660 0.36 -0.9 346,070 - GFF2660 0.37 +0.7 346,072 + GFF2660 0.38 +0.2 346,072 + GFF2660 0.38 +0.3 346,072 + GFF2660 0.38 +0.1 346,072 + GFF2660 0.38 -0.2 346,072 + GFF2660 0.38 +0.4 346,072 + GFF2660 0.38 -0.2 346,073 - GFF2660 0.38 +0.7 346,073 - GFF2660 0.38 -0.3 346,073 - GFF2660 0.38 -0.8 346,073 - GFF2660 0.38 +0.3 346,073 - GFF2660 0.38 +0.9 346,073 - GFF2660 0.38 +0.0 346,149 - GFF2660 0.74 -2.0 346,149 - GFF2660 0.74 +0.3 346,149 - GFF2660 0.74 -0.2 346,225 + +0.8 346,225 + +0.2 346,225 + -0.8 346,225 + -0.1 346,225 + -1.3 346,225 + +0.7 346,226 - +0.2 346,226 - -1.8 346,226 - +1.0 346,226 - +0.2
Or see this region's nucleotide sequence