Strain Fitness in Xanthobacter sp. DMC5 around GFF2643

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2641 and GFF2642 overlap by 4 nucleotidesGFF2642 and GFF2643 overlap by 4 nucleotidesGFF2643 and GFF2644 overlap by 4 nucleotides GFF2641 - hypothetical protein, at 325,580 to 326,860 GFF2641 GFF2642 - hypothetical protein, at 326,857 to 327,546 GFF2642 GFF2643 - hypothetical protein, at 327,543 to 328,595 GFF2643 GFF2644 - hypothetical protein, at 328,592 to 329,833 GFF2644 Position (kb) 327 328 329Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 326.549 kb on + strand, within GFF2641at 326.549 kb on + strand, within GFF2641at 326.550 kb on - strand, within GFF2641at 326.866 kb on + strandat 326.866 kb on + strandat 326.866 kb on + strandat 326.866 kb on + strandat 326.867 kb on - strandat 326.867 kb on - strandat 326.867 kb on - strandat 326.887 kb on + strandat 326.887 kb on + strandat 326.917 kb on + strandat 327.238 kb on + strand, within GFF2642at 327.238 kb on + strand, within GFF2642at 327.238 kb on + strand, within GFF2642at 327.238 kb on + strand, within GFF2642at 327.238 kb on + strand, within GFF2642at 327.239 kb on - strand, within GFF2642at 327.239 kb on - strand, within GFF2642at 327.239 kb on - strand, within GFF2642at 327.239 kb on - strand, within GFF2642at 327.239 kb on - strand, within GFF2642at 327.239 kb on - strand, within GFF2642at 327.244 kb on + strand, within GFF2642at 327.244 kb on + strand, within GFF2642at 327.244 kb on + strand, within GFF2642at 327.245 kb on - strand, within GFF2642at 327.280 kb on + strand, within GFF2642at 327.280 kb on + strand, within GFF2642at 327.280 kb on + strand, within GFF2642at 327.281 kb on - strand, within GFF2642at 327.281 kb on - strand, within GFF2642at 327.609 kb on - strandat 327.609 kb on - strandat 327.690 kb on + strand, within GFF2643at 327.690 kb on + strand, within GFF2643at 327.691 kb on - strand, within GFF2643at 327.834 kb on - strand, within GFF2643at 327.893 kb on - strand, within GFF2643at 327.913 kb on - strand, within GFF2643at 327.913 kb on - strand, within GFF2643at 327.913 kb on - strand, within GFF2643at 327.913 kb on - strand, within GFF2643at 327.913 kb on - strand, within GFF2643at 327.913 kb on - strand, within GFF2643at 327.913 kb on - strand, within GFF2643at 327.945 kb on + strand, within GFF2643at 327.945 kb on + strand, within GFF2643at 327.945 kb on + strand, within GFF2643at 327.945 kb on + strand, within GFF2643at 327.992 kb on - strand, within GFF2643at 328.124 kb on - strand, within GFF2643at 328.156 kb on - strand, within GFF2643at 328.156 kb on - strand, within GFF2643at 328.188 kb on + strand, within GFF2643at 328.188 kb on + strand, within GFF2643at 328.188 kb on + strand, within GFF2643at 328.188 kb on + strand, within GFF2643at 328.188 kb on + strand, within GFF2643at 328.188 kb on + strand, within GFF2643at 328.212 kb on + strand, within GFF2643at 328.212 kb on + strand, within GFF2643at 328.212 kb on + strand, within GFF2643at 328.314 kb on + strand, within GFF2643at 328.314 kb on + strand, within GFF2643at 328.470 kb on + strand, within GFF2643at 328.470 kb on + strand, within GFF2643at 328.470 kb on + strand, within GFF2643at 328.488 kb on + strand, within GFF2643at 328.488 kb on + strand, within GFF2643at 328.488 kb on + strand, within GFF2643at 328.488 kb on + strand, within GFF2643at 328.488 kb on + strand, within GFF2643at 328.488 kb on + strand, within GFF2643at 328.488 kb on + strand, within GFF2643at 328.489 kb on - strand, within GFF2643at 328.489 kb on - strand, within GFF2643at 328.489 kb on - strand, within GFF2643at 328.489 kb on - strand, within GFF2643at 328.489 kb on - strand, within GFF2643at 328.489 kb on - strand, within GFF2643at 328.489 kb on - strand, within GFF2643at 328.489 kb on - strand, within GFF2643at 328.589 kb on + strandat 328.591 kb on + strandat 328.591 kb on + strandat 328.591 kb on + strandat 328.591 kb on + strandat 328.592 kb on - strandat 328.592 kb on - strandat 328.778 kb on + strand, within GFF2644at 328.779 kb on - strand, within GFF2644at 328.779 kb on - strand, within GFF2644at 328.822 kb on - strand, within GFF2644at 328.823 kb on + strand, within GFF2644at 328.823 kb on + strand, within GFF2644at 328.824 kb on - strand, within GFF2644at 328.877 kb on + strand, within GFF2644at 328.877 kb on + strand, within GFF2644at 328.877 kb on + strand, within GFF2644at 328.877 kb on + strand, within GFF2644at 328.878 kb on - strand, within GFF2644at 328.878 kb on - strand, within GFF2644at 328.878 kb on - strand, within GFF2644at 328.878 kb on - strand, within GFF2644at 328.878 kb on - strand, within GFF2644at 328.878 kb on - strand, within GFF2644at 328.878 kb on - strand, within GFF2644at 328.878 kb on - strand, within GFF2644at 329.071 kb on + strand, within GFF2644at 329.071 kb on + strand, within GFF2644at 329.071 kb on + strand, within GFF2644at 329.072 kb on - strand, within GFF2644at 329.203 kb on + strand, within GFF2644at 329.215 kb on - strand, within GFF2644at 329.278 kb on + strand, within GFF2644at 329.318 kb on - strand, within GFF2644at 329.435 kb on + strand, within GFF2644at 329.436 kb on - strand, within GFF2644at 329.436 kb on - strand, within GFF2644at 329.552 kb on + strand, within GFF2644at 329.552 kb on + strand, within GFF2644at 329.552 kb on + strand, within GFF2644at 329.553 kb on - strand, within GFF2644at 329.579 kb on + strand, within GFF2644at 329.579 kb on + strand, within GFF2644

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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326,549 + GFF2641 0.76 +3.9
326,549 + GFF2641 0.76 +3.8
326,550 - GFF2641 0.76 +0.8
326,866 + -1.3
326,866 + -1.5
326,866 + +0.0
326,866 + -0.6
326,867 - +0.8
326,867 - -0.2
326,867 - +1.0
326,887 + +1.9
326,887 + -1.5
326,917 + -0.8
327,238 + GFF2642 0.55 -0.5
327,238 + GFF2642 0.55 +0.5
327,238 + GFF2642 0.55 +1.4
327,238 + GFF2642 0.55 +1.0
327,238 + GFF2642 0.55 +1.2
327,239 - GFF2642 0.55 +0.4
327,239 - GFF2642 0.55 -0.6
327,239 - GFF2642 0.55 -2.3
327,239 - GFF2642 0.55 -0.2
327,239 - GFF2642 0.55 +0.3
327,239 - GFF2642 0.55 -1.8
327,244 + GFF2642 0.56 +3.6
327,244 + GFF2642 0.56 +1.5
327,244 + GFF2642 0.56 +0.9
327,245 - GFF2642 0.56 -0.1
327,280 + GFF2642 0.61 +1.0
327,280 + GFF2642 0.61 +2.7
327,280 + GFF2642 0.61 +3.4
327,281 - GFF2642 0.61 +1.1
327,281 - GFF2642 0.61 -0.3
327,609 - -1.0
327,609 - +0.4
327,690 + GFF2643 0.14 -1.0
327,690 + GFF2643 0.14 -0.6
327,691 - GFF2643 0.14 -1.3
327,834 - GFF2643 0.28 +0.0
327,893 - GFF2643 0.33 +0.7
327,913 - GFF2643 0.35 -1.4
327,913 - GFF2643 0.35 -0.8
327,913 - GFF2643 0.35 -0.3
327,913 - GFF2643 0.35 +0.3
327,913 - GFF2643 0.35 +0.4
327,913 - GFF2643 0.35 +0.2
327,913 - GFF2643 0.35 -1.0
327,945 + GFF2643 0.38 +1.1
327,945 + GFF2643 0.38 +0.1
327,945 + GFF2643 0.38 -1.6
327,945 + GFF2643 0.38 -0.0
327,992 - GFF2643 0.43 -0.7
328,124 - GFF2643 0.55 -1.1
328,156 - GFF2643 0.58 -0.5
328,156 - GFF2643 0.58 -0.4
328,188 + GFF2643 0.61 +0.5
328,188 + GFF2643 0.61 -2.0
328,188 + GFF2643 0.61 +0.6
328,188 + GFF2643 0.61 -0.1
328,188 + GFF2643 0.61 -0.6
328,188 + GFF2643 0.61 -0.9
328,212 + GFF2643 0.64 -1.0
328,212 + GFF2643 0.64 +0.6
328,212 + GFF2643 0.64 +0.0
328,314 + GFF2643 0.73 -1.1
328,314 + GFF2643 0.73 -0.7
328,470 + GFF2643 0.88 -1.0
328,470 + GFF2643 0.88 -1.4
328,470 + GFF2643 0.88 -0.8
328,488 + GFF2643 0.90 -2.2
328,488 + GFF2643 0.90 -0.9
328,488 + GFF2643 0.90 +1.4
328,488 + GFF2643 0.90 -0.3
328,488 + GFF2643 0.90 +0.7
328,488 + GFF2643 0.90 +0.3
328,488 + GFF2643 0.90 -0.4
328,489 - GFF2643 0.90 +1.1
328,489 - GFF2643 0.90 -0.5
328,489 - GFF2643 0.90 +0.4
328,489 - GFF2643 0.90 +1.5
328,489 - GFF2643 0.90 -0.4
328,489 - GFF2643 0.90 -0.2
328,489 - GFF2643 0.90 -0.5
328,489 - GFF2643 0.90 -0.1
328,589 + -0.0
328,591 + -1.2
328,591 + -0.6
328,591 + +0.6
328,591 + +0.4
328,592 - +0.5
328,592 - +0.3
328,778 + GFF2644 0.15 -0.8
328,779 - GFF2644 0.15 +0.5
328,779 - GFF2644 0.15 -1.2
328,822 - GFF2644 0.19 -1.5
328,823 + GFF2644 0.19 +0.1
328,823 + GFF2644 0.19 +0.4
328,824 - GFF2644 0.19 +0.4
328,877 + GFF2644 0.23 +0.2
328,877 + GFF2644 0.23 -0.8
328,877 + GFF2644 0.23 +1.5
328,877 + GFF2644 0.23 -0.5
328,878 - GFF2644 0.23 -1.1
328,878 - GFF2644 0.23 +0.4
328,878 - GFF2644 0.23 +0.1
328,878 - GFF2644 0.23 -0.2
328,878 - GFF2644 0.23 +0.2
328,878 - GFF2644 0.23 +0.1
328,878 - GFF2644 0.23 -0.8
328,878 - GFF2644 0.23 -0.9
329,071 + GFF2644 0.39 -0.5
329,071 + GFF2644 0.39 +0.4
329,071 + GFF2644 0.39 -0.2
329,072 - GFF2644 0.39 +0.4
329,203 + GFF2644 0.49 -0.0
329,215 - GFF2644 0.50 -0.5
329,278 + GFF2644 0.55 +1.0
329,318 - GFF2644 0.58 -0.3
329,435 + GFF2644 0.68 -0.2
329,436 - GFF2644 0.68 -0.5
329,436 - GFF2644 0.68 -0.2
329,552 + GFF2644 0.77 +1.8
329,552 + GFF2644 0.77 +0.5
329,552 + GFF2644 0.77 +0.7
329,553 - GFF2644 0.77 -0.6
329,579 + GFF2644 0.79 +0.1
329,579 + GFF2644 0.79 -0.7

Or see this region's nucleotide sequence